View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_high_57 (Length: 344)
Name: NF17203_high_57
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 43611933 - 43611620
Alignment:
| Q |
18 |
gagaagaatcatttttcaagtacagctacaaggccctggagcaaaggtggaagctactgagagcagcagttgatagtggcggtttattcagtttgcccaa |
117 |
Q |
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| T |
43611933 |
gagaagaatcatttttcaagtacagctacaaggccctggagcaaaggtggaagctactgagagtagcagttgatagtggtggtttattcagtttgcccaa |
43611834 |
T |
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| Q |
118 |
attttcttctgcattctgcaactttctcaatcaggagtcggagattcaaccaggtaaacaaattattaacatatttgatagcaacatcgtgatttaagta |
217 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43611833 |
attttcttctgcattctgcacctttctcaatcaagagtcggagattcaaccaggtaaacaaattattaacatatttgatagcaacatcgtgatttaagtg |
43611734 |
T |
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| Q |
218 |
caacacatatcttaaaatggtatcaaagtctatccaagaattgtttgatcatctgctatcaggtcacagttaatggtcgagatttttaattgtattatag |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43611733 |
caacacatattttaaaatggtatcaaagtctatccaagaattgtttgatcatctgctatcaggtcacagttaatggtcgagatttttaattgtattatag |
43611634 |
T |
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| Q |
318 |
cacctatctaatct |
331 |
Q |
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|||||||||||||| |
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| T |
43611633 |
cacctatctaatct |
43611620 |
T |
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