View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_high_6 (Length: 828)
Name: NF17203_high_6
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 583; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 18 - 810
Target Start/End: Complemental strand, 15545789 - 15545013
Alignment:
| Q |
18 |
ctatggtccttgcacaaaccaaaacagcagtaagtttgagcttcctcatccaatatcacaagataacttgaatttggccctgatggtggtggatctgaaa |
117 |
Q |
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| T |
15545789 |
ctatggtccttgcacaaaccaaaacagcagtaagtttgagcttcttcatccaatatcacaagataacttgaatttggtcctgatggtggtgggtctgaaa |
15545690 |
T |
|
| Q |
118 |
gagcactaggattcattttgtacatggaaagaagtctagttgcatacattttctctgatttgtagattaaactatgatcttgaagattaatcaatatatg |
217 |
Q |
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| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15545689 |
gtgcactaggattcattttgtacatggaaagaagtcttgttgcatacattttctctgatttgtagattaaactatgatcttgaagattaatcaatatatg |
15545590 |
T |
|
| Q |
218 |
tttatgaatgtacctgtatcctttatatacttcatatttcttatccatgtt-gaactttgaacgttaattaatatggataattctcatttgtgaggcagt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15545589 |
tttatgaatgtacctgtatcctttatatacttcatatttcttatccatgtttgaactttgaacgttaat----atggataattctcatttgtgaggcagt |
15545494 |
T |
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| Q |
317 |
gactaattcatgataatgggtgacgtcttctgtacatatgttgcacacgtacgtacatatcatcattctttcctaatggaatgttttcatagaatattca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15545493 |
gactaattcatgataatgggtgacgtcttctgtacatatgttgcacacgtacgtacatatcatcattctttcctaatggaatgttttcatagaatattca |
15545394 |
T |
|
| Q |
417 |
attggttcaaaacaaaaattccattgcgtttattgacttggtccattctagttttaatttgcatgtattttggaaacatgtgtaaattgtagaagatgaa |
516 |
Q |
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| T |
15545393 |
attggttcaaaacaaaaattccattgcgtattttgacttggtccattctagttttaatttgcatgtattttggaaacatgtgtaaattgtagaagatgaa |
15545294 |
T |
|
| Q |
517 |
ctgtaccagaaaagtagaagataaaaagttagagatagagagacacatatatatcaaccgttnnnnnnnnngggtaaacatatatcaagttacatacaca |
616 |
Q |
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| T |
15545293 |
ctgtaccagaaaagtagaagataaaaagttagagatagagagacacatatatatcaaccgtt-aaaaaaaagggtaaacatatatcaagttacatacact |
15545195 |
T |
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| Q |
617 |
annnnnnnnnnnagtaaagttacatgcacaatcaatattttgatctgaaaataacaattaatatttcaaatatgcttttacnnnnnnnnnnnnncccttc |
716 |
Q |
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| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| |||| |
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| T |
15545194 |
a--tttttttttagtaaagttacatgcacaatcaatattttgatatgaaaataaca---aatatttcaaatacgcttttactttttttt-------cttc |
15545107 |
T |
|
| Q |
717 |
tttttcttgaataaagagagcaaatgtaggcatcaacgggaatattgataactcaaacaggttgggaccccaaatccaccctatcccataccat |
810 |
Q |
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| T |
15545106 |
tttttcctgaataaagagagcaaatgtaggcatcaaatggaatattgataactcaaacaggttgggaccccaaatccaccctatcccataccat |
15545013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 15528352 - 15528132
Alignment:
| Q |
18 |
ctatggtccttgcacaaaccaaaacagcagtaagtttgagcttcctcatccaatatcacaagataacttgaatttggccctgatggtggtggatctgaaa |
117 |
Q |
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|||| ||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
15528352 |
ctattgtctttggacaaaccaaaacaagagtaagtttgagcttcttcatccaatatcacaagataacttgaatttggccccgatggtggtgggtctgaaa |
15528253 |
T |
|
| Q |
118 |
gagcactaggattcattttgtacatggaaagaagtctagttgcatacattttctctgatttgtagattaaactatgatcttgaagattaatcaatatatg |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |
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| T |
15528252 |
gagcactaggattctttttgtacatggaaagaagtcttgttgcatacattttcactgatttgtagattaaattatgatcttgaagat---------tatg |
15528162 |
T |
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| Q |
218 |
tttatgaatgtacctgtatcctttatatac |
247 |
Q |
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||||||||||||| || ||||||||||||| |
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| T |
15528161 |
tttatgaatgtacgtgaatcctttatatac |
15528132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 24 - 195
Target Start/End: Complemental strand, 15517925 - 15517754
Alignment:
| Q |
24 |
tccttgcacaaaccaaaacagcagtaagtttgagcttcctcatccaatatcacaagataacttgaatttggccctgatggtggtggatctgaaagagcac |
123 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| |
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| T |
15517925 |
tccttgcacaaaccaaaacaagagtaagtttgagcttcttcatccaatatcacaagataacttgaatttggccccgatggtggtgggtctgaaagtgcac |
15517826 |
T |
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| Q |
124 |
taggattcattttgtacatggaaagaagtctagttgcatacattttctctgatttgtagattaaactatgat |
195 |
Q |
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| T |
15517825 |
taggattctttttgtacatggaaagaagtcttgttgcatacattttctctgatttgtaaattaaactatgat |
15517754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 31 - 195
Target Start/End: Complemental strand, 15522208 - 15522044
Alignment:
| Q |
31 |
acaaaccaaaacagcagtaagtttgagcttcctcatccaatatcacaagataacttgaatttggccctgatggtggtggatctgaaagagcactaggatt |
130 |
Q |
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||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15522208 |
acaaaccaaaacaagagtaagtttgagctacttcatccaatatcacaagataacttgaatttggtcctgatggtggtggatctgaaagagcactaggatt |
15522109 |
T |
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| Q |
131 |
cattttgtacatggaaagaagtctagttgcatacattttctctgatttgtagattaaactatgat |
195 |
Q |
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| T |
15522108 |
ccttttgtacatggaaagaagtcttgttgcatacattttcaccgatttataaattaaactatgat |
15522044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 15550491 - 15550370
Alignment:
| Q |
46 |
agtaagtttgagcttcctcatccaatatcacaagataacttgaatttggccctgatggtggtggatctgaaagagcactaggattcattttgtacatgga |
145 |
Q |
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|||||||||||||||| ||||||||||| |||||||||| |||||||| |||||||||||| ||||||||||||||||||| ||| |||| |||||||| |
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| T |
15550491 |
agtaagtttgagcttcttcatccaatattacaagataaccggaatttggacctgatggtggttgatctgaaagagcactagggttccttttatacatgga |
15550392 |
T |
|
| Q |
146 |
aagaagtctagttgcatacatt |
167 |
Q |
| |
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||||||||| | |||||||||| |
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| T |
15550391 |
aagaagtcttgctgcatacatt |
15550370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 15517739 - 15517649
Alignment:
| Q |
183 |
attaaactatgatcttgaagattaatcaatatatgtttatg------aatgtacctgtatcctttatatacttcatatttcttatccatgtt |
268 |
Q |
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| T |
15517739 |
attaaacaatgatcttgaagattaatcaatatatgtttatgtttatgaatgtacgtgtatcctt-atatacttcatatttcttatccatgtt |
15517649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 367 - 466
Target Start/End: Complemental strand, 15521537 - 15521441
Alignment:
| Q |
367 |
acgtacatatcatcattctttcctaatggaatgttttcatagaatattcaattggttcaaaacaaaaattccattgcgtttattgacttggtccattcta |
466 |
Q |
| |
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|||||||||| ||||| | |||||| |||| |||||||||||||||| ||||||||| ||||||| |||||| || |||||||||||||| ||||| |
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| T |
15521537 |
acgtacatattgtcattgtcgcctaatagaat-ttttcatagaatattcggttggttcaatacaaaaaatccatt--gtgtattgacttggtcctttcta |
15521441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 465 - 513
Target Start/End: Complemental strand, 15527932 - 15527884
Alignment:
| Q |
465 |
tagttttaatttgcatgtattttggaaacatgtgtaaattgtagaagat |
513 |
Q |
| |
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||||| |||||||||||||||||||||| |||| |||||| |||||||| |
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| T |
15527932 |
tagttctaatttgcatgtattttggaaatatgtctaaattatagaagat |
15527884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 362
Target Start/End: Complemental strand, 15528023 - 15527990
Alignment:
| Q |
329 |
ataatgggtgacgtcttctgtacatatgttgcac |
362 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
15528023 |
ataatgggtgacgtcttctatacatatgttgcac |
15527990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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