View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17203_high_60 (Length: 332)
Name: NF17203_high_60
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_60 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 16843547 - 16843869
Alignment:
| Q |
1 |
cacagtctttgtctcactgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843547 |
cacagtctttgtctcactgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagtt |
16843646 |
T |
|
| Q |
101 |
acaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843647 |
acaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaac |
16843746 |
T |
|
| Q |
201 |
aacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaatacatgggcacgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843747 |
aacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaatacatgggcacgg |
16843846 |
T |
|
| Q |
301 |
acaattactacaacgattctgtg |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
16843847 |
acaattactacaacgattctgtg |
16843869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 16846230 - 16846536
Alignment:
| Q |
16 |
actgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagttacaggtactcgtttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
16846230 |
actgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagttacatgtactcagttt |
16846329 |
T |
|
| Q |
116 |
acgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaacaacaattttagtggc |
215 |
Q |
| |
|
| | || ||||| ||| |||| |||||| |||||||||||||||||||||||||| || ||||||||||| || ||| | ||||| || ||||| |
|
|
| T |
16846330 |
aaggtcaaataaactttatggttcaatcacatgttctagcaccaagcatccatttcc-aaattgagaattttggacatcttcgataacaaattcagtgga |
16846428 |
T |
|
| Q |
216 |
accttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaatacatgggcacggacaattactacaacg |
315 |
Q |
| |
|
| |||||||||||||| ||| |||| ||||||||||||||||| | | |||||| | | ||||||||| |||||||| | || ||||||||| || | |
|
|
| T |
16846429 |
ccgttgccaacatcatgtatcaagaattttcaaggaatgatgaacgcgaatgataataaaactggtttgcagtacatgggaaaggtcaattactataatg |
16846528 |
T |
|
| Q |
316 |
attctgtg |
323 |
Q |
| |
|
|||||||| |
|
|
| T |
16846529 |
attctgtg |
16846536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 24218282 - 24218544
Alignment:
| Q |
1 |
cacagtctttgtctcactgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagtt |
100 |
Q |
| |
|
||||||||||| ||||||| || | |||||||||||||||||||| ||||||| |||| | ||||||||||||| |||| | ||| ||| |||||||| |
|
|
| T |
24218282 |
cacagtctttggctcactgcacacaacttgaagttttggaccttggagacaacatcataaacgatacatttcccaattggttagaagttctgcaagagtt |
24218381 |
T |
|
| Q |
101 |
acaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaac |
200 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||||||| | ||||||||||||||||||||| || ||||||| ||| ||||||||| ||||||||| |
|
|
| T |
24218382 |
acaggtactcagtttacgatcaaatcatcttcatggtggaatcacttgttctagcaccaaacaatcatttccgaagatgagaatttacgatgtctctggt |
24218481 |
T |
|
| Q |
201 |
aacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtg |
263 |
Q |
| |
|
|| ||||| ||||| || |||||||||| ||| || |||| |||||||||||||| |||||| |
|
|
| T |
24218482 |
aataatttccgtggccccgtgccaacatcttgcctcaagaattttcaaggaatgattaatgtg |
24218544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 37593813 - 37593523
Alignment:
| Q |
1 |
cacagtctttgtctcactgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| ||||||||||||||||| |
|
|
| T |
37593813 |
cacagtctttgtctcactgttcatttcttgaagttttggaccttggtgacaacaacatagaggacacatttccaaattggctagaaactctacaagagtt |
37593714 |
T |
|
| Q |
101 |
acaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaac |
200 |
Q |
| |
|
||| || || |||||||| |||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | |
|
|
| T |
37593713 |
acaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttttgatgtttctatc |
37593614 |
T |
|
| Q |
201 |
aacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaataca |
291 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
37593613 |
aacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaataca |
37593523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 37696204 - 37695914
Alignment:
| Q |
1 |
cacagtctttgtctcactgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| ||||||||||||||||| |
|
|
| T |
37696204 |
cacagtctttgtctcactgttcatttcttgaagttttggaccttggtgacaacaacatagaggacacatttccaaattggctagaaactctacaagagtt |
37696105 |
T |
|
| Q |
101 |
acaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaac |
200 |
Q |
| |
|
||| || || |||||||| |||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | |
|
|
| T |
37696104 |
acaagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttttgatgtttctatc |
37696005 |
T |
|
| Q |
201 |
aacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaataca |
291 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
37696004 |
aacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaataca |
37695914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 291
Target Start/End: Complemental strand, 37532707 - 37532419
Alignment:
| Q |
3 |
cagtctttgtctcactgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagttac |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
37532707 |
cagtctttgtctcactgttcatttcttgaagttttggaccttggtgacaacaacatagaggacacatttccaaattggctagaaactctacaagagttac |
37532608 |
T |
|
| Q |
103 |
aggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaacaa |
202 |
Q |
| |
|
| || || |||||||| |||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37532607 |
aagttctaagcttacgatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttttgatgtttctaacaa |
37532508 |
T |
|
| Q |
203 |
caattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaataca |
291 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
37532507 |
caattttagtgggcccttgccaatatcatgcatcaagaactttaaaggaatgatgaatgtgaatgacagccaaattggtttgcaataca |
37532419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 37393443 - 37393722
Alignment:
| Q |
16 |
actgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagttacaggtactcgtttt |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| || ||| |
|
|
| T |
37393443 |
actgttcatatcttgaagtattggaccttggtgacaacaacatagaggatacttttcccaattggctagaaactctacaagagttacaggtgctaagttt |
37393542 |
T |
|
| Q |
116 |
acgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaacaacaattttagtggc |
215 |
Q |
| |
|
|||||| ||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
37393543 |
acgatcaaatcatcttcatgggtcaatcacatgttctagcaccaagcatccatttcctaagttgagaatttatgatgtctctagtaacaattttagtggc |
37393642 |
T |
|
| Q |
216 |
accttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaatacatggg |
295 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| ||||| || | ||||| |||||||||||||||||||| |
|
|
| T |
37393643 |
cccttgccaacatcatgcttcaagaactttcaaggaatgatggatgtgaataacagccaaattggtttgcaatacatggg |
37393722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 3 - 262
Target Start/End: Complemental strand, 37702290 - 37702031
Alignment:
| Q |
3 |
cagtctttgtctcactgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagttac |
102 |
Q |
| |
|
||||||||| |||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||||| |
|
|
| T |
37702290 |
cagtctttggctcaatgttcaaatcttgaagtattggaccttggtgacaacaacatagaggatacatttcccaattggctagaaactttaccagagttac |
37702191 |
T |
|
| Q |
103 |
aggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaacaa |
202 |
Q |
| |
|
|||| || ||||||||| ||| |||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37702190 |
aggtgctgagtttacgatcaaatcatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttttgatgcctctaacaa |
37702091 |
T |
|
| Q |
203 |
caattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgt |
262 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
37702090 |
caattttagtggccccttgccaacatcatgcatcaagaactttcaaggaatgattaatgt |
37702031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 37823513 - 37823219
Alignment:
| Q |
1 |
cacagtctttgtctcactgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagtt |
100 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
37823513 |
cacaatctttggctaactgttcatatcttgaagttttggaccttggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagtt |
37823414 |
T |
|
| Q |
101 |
acaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaac |
200 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||| | |||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37823413 |
acaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaac |
37823314 |
T |
|
| Q |
201 |
aacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaatacatggg |
295 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
37823313 |
aacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgagtgacgaccaaattggtttgcaatacatggg |
37823219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 37401549 - 37401843
Alignment:
| Q |
1 |
cacagtctttgtctcactgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagtt |
100 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
37401549 |
cacaatctttggctaactgttcatatcttgaagttttggaccttggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagtt |
37401648 |
T |
|
| Q |
101 |
acaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaac |
200 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||| | |||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37401649 |
acaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaac |
37401748 |
T |
|
| Q |
201 |
aacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaatacatggg |
295 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| | | | |||||||||||||||||| |
|
|
| T |
37401749 |
aacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatggg |
37401843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 37639355 - 37639061
Alignment:
| Q |
1 |
cacagtctttgtctcactgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagtt |
100 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
37639355 |
cacaatctttggctaactgttcatatcttgaagttttggaccttggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagtt |
37639256 |
T |
|
| Q |
101 |
acaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaac |
200 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||| | |||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37639255 |
acaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaac |
37639156 |
T |
|
| Q |
201 |
aacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaatacatggg |
295 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| | | | |||||||||||||||||| |
|
|
| T |
37639155 |
aacaattttagtgggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatggg |
37639061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 37711113 - 37710846
Alignment:
| Q |
1 |
cacagtctttgtctcactgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagtt |
100 |
Q |
| |
|
|||| |||||| || ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
37711113 |
cacaatctttggctaactgttcatatcttgaagttttggaccttggtgacaacaacgttgaggatacatttcctgattggctagaaactctaccagagtt |
37711014 |
T |
|
| Q |
101 |
acaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaac |
200 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||| | |||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37711013 |
acaggtgataagtttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaac |
37710914 |
T |
|
| Q |
201 |
aacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatga |
268 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| ||| |||| |
|
|
| T |
37710913 |
aacaattttagtgggcccttgccagcatcatgcatcaagaactttcaaggaatgatgaaggtgaatga |
37710846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 37382877 - 37383199
Alignment:
| Q |
1 |
cacagtctttgtctcactgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagtt |
100 |
Q |
| |
|
||||||||||| |||||||| || | || ||||||||||||||||| ||||||||| |||||||||| ||||||| ||||||||||||||||||||| || |
|
|
| T |
37382877 |
cacagtctttggctcactgtacaaaactcgaagttttggaccttggagacaacaacgtagaggatacttttcccaattggcttgaaactctacaagaatt |
37382976 |
T |
|
| Q |
101 |
acaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaac |
200 |
Q |
| |
|
|||||| ||| |||| |||| ||||| |||||||| | |||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37382977 |
acaggtgctcagtttaagatcaaataaacttcatggcgcaatcacatgctctagcaccaaacatccatttcccaagttgagaatttttgatgtctctaac |
37383076 |
T |
|
| Q |
201 |
aacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaatacatgggcacgg |
300 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |||||| |||| ||||||||||||||||||||| |||| | | | |||||||||||||||||| | | |
|
|
| T |
37383077 |
aacaattttattgggcccttgccaacatcgtgcatcaagaattttcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatgggtaagt |
37383176 |
T |
|
| Q |
301 |
acaattactacaacgattctgtg |
323 |
Q |
| |
|
||||||||| || ||||||||| |
|
|
| T |
37383177 |
ccaattactataatgattctgtg |
37383199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 34 - 323
Target Start/End: Complemental strand, 37435286 - 37434997
Alignment:
| Q |
34 |
ttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagttacaggtactcgttttacgatctaataatcttca |
133 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||| |||| ||||| ||| | |
|
|
| T |
37435286 |
ttttggaccttggatacaacaacatagaggatacatttcccaattggctagaaactctacaagagttacaggtactcagtttaagatcaaataaacttaa |
37435187 |
T |
|
| Q |
134 |
tggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaacaacaattttagtggcaccttgccaacatcatgc |
233 |
Q |
| |
|
||| |||||| ||||||| |||||| ||||| ||| ||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||| |
|
|
| T |
37435186 |
tggttcaatcacctgttctaacaccaaccatcctttttctaagttaagaatttttgacatcttcggtaacaattttagtggatccttgccaacatcatgt |
37435087 |
T |
|
| Q |
234 |
atccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaatacatgggcacggacaattactacaacgattctgtg |
323 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | |||||||||| || ||||||||| |
|
|
| T |
37435086 |
atcaagaactttcaaggaatgatgaatgtgaatgatagccagattggtttgcaatacatgggtaagaacaattactataatgattctgtg |
37434997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 37413740 - 37413908
Alignment:
| Q |
25 |
atcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagttacaggtactcgttttacgatctaa |
124 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||| || |
|
|
| T |
37413740 |
atcttgaagttctggaccttggtgacaacaatatagaggatacatttcccaattggctagaaactctacaagagttacaggtgctaagtttacgatcaaa |
37413839 |
T |
|
| Q |
125 |
taatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgt |
193 |
Q |
| |
|
|||||||||||| | |||||| ||||||||||| |||||| ||||||| ||||||||||| ||| |||| |
|
|
| T |
37413840 |
taatcttcatggtgcaatcacctgttctagcacaaagcatacatttcccaagttgagaatattttatgt |
37413908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 99 - 323
Target Start/End: Complemental strand, 37428562 - 37428339
Alignment:
| Q |
99 |
ttacaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctcta |
198 |
Q |
| |
|
|||||||| ||| ||||| |||| ||||| || ||||| |||||||||||||| ||||| |||||||| || |||||||||||||| || ||| || |
|
|
| T |
37428562 |
ttacaggttctcattttaagatcaaataaactgcatggtacaatcacttgttctatgaccaaacatccattccc-aagttgagaattttcgacatctata |
37428464 |
T |
|
| Q |
199 |
acaacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaatacatgggcac |
298 |
Q |
| |
|
| || | ||||||||| ||||||| ||| |||||||| ||| ||||||||||||||||||||| |||||||||| ||||||||||| |||||||| | |
|
|
| T |
37428463 |
ataaaatttttagtggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaa |
37428364 |
T |
|
| Q |
299 |
ggacaattactacaacgattctgtg |
323 |
Q |
| |
|
|| ||||||||| || ||||||||| |
|
|
| T |
37428363 |
ggccaattactataatgattctgtg |
37428339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 26437767 - 26437679
Alignment:
| Q |
166 |
catttcctaagttgagaatttttgatgtctctaacaacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatg |
254 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| |||||||||||| | ||||| ||| | | |||| | |||||| |||||||| |
|
|
| T |
26437767 |
catttcctaagttgagggtttttgatgtctccaacaataattttagtggctctttgcccacaacgtacatcaaaaactttaaaggaatg |
26437679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 26451136 - 26451048
Alignment:
| Q |
166 |
catttcctaagttgagaatttttgatgtctctaacaacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatg |
254 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| |||||||||||| | ||||| ||| | | |||| | |||||| |||||||| |
|
|
| T |
26451136 |
catttcctaagttgagggtttttgatgtctccaacaataattttagtggctctttgcccacaacgtacatcaaaaactttaaaggaatg |
26451048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 14552981 - 14552687
Alignment:
| Q |
1 |
cacagtctttgtctcactgttcatatcttgaagttttggaccttggtgacaacaacatagaggatacatttcccagttggcttgaaactctacaagagtt |
100 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||| || |||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
14552981 |
cacagtcattggctcactgttcaaatcttgaagtattagaccttggtgacaacagcatagaggatacatttcccaattggctagaaactctacaagagtt |
14552882 |
T |
|
| Q |
101 |
acaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctctaac |
200 |
Q |
| |
|
||| || || ||||||||| ||| ||||||| |||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14552881 |
acaagtgctaagtttacgatcaaatcatcttcacggagcaatcacctgttctagcatcaagcattcatttcctaagttgagaatttttgatgtctctaac |
14552782 |
T |
|
| Q |
201 |
aacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaatacatggg |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| ||||| |||||||||||||||||||| |
|
|
| T |
14552781 |
aacaattttagtggcaccttgccaacatcatgcatcaagaactttcaaggaatgatgaacgtgaatgacagccaaattggtttgcaatacatggg |
14552687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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