View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_high_66 (Length: 314)

Name: NF17203_high_66
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17203_high_66
NF17203_high_66
[»] chr4 (6 HSPs)
chr4 (1-108)||(45883413-45883520)
chr4 (1-119)||(56209721-56209839)
chr4 (1-113)||(45863465-45863577)
chr4 (1-123)||(47292357-47292478)
chr4 (230-298)||(56209939-56210007)
chr4 (1-109)||(54303285-54303393)
[»] chr5 (4 HSPs)
chr5 (3-120)||(10520215-10520332)
chr5 (78-194)||(35851471-35851587)
chr5 (1-123)||(35803523-35803645)
chr5 (245-302)||(10520101-10520158)
[»] chr8 (1 HSPs)
chr8 (3-114)||(7973632-7973743)
[»] chr2 (1 HSPs)
chr2 (60-111)||(24348401-24348452)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 45883413 - 45883520
Alignment:
Q  1 tcgaatttcatcgagtttagcccaaccgcaatttaaattgtgaatataaagatatacagcagaaatacgaggatcataagctgctttcaagaaattatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | |||||| ||| ||||||||||||||||||||||||||||||| |||||||||    
T  45883413 tcgaatttcatcgagtttagcccaaccgcaatttaaattgtcaatttgaagatacacaccagaaatacgaggatcataagctgctttcaacaaattatcg 45883512  T
Q  101 caaatttg 108  Q
    ||||||||    
T  45883513 caaatttg 45883520  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 56209721 - 56209839
Alignment:
Q  1 tcgaatttcatcgagtttagcccaaccgcaatttaaattgtgaatataaagatatacagcagaaatacgaggatcataagctgctttcaagaaattatcg 100  Q
    ||||||||||||||||||||||||||| ||||||||| | | ||||  ||||||||| |||||||||||| ||||||||||||||||||| | |||||||    
T  56209721 tcgaatttcatcgagtttagcccaaccacaatttaaagtatcaatacgaagatatacggcagaaatacgatgatcataagctgctttcaacatattatcg 56209820  T
Q  101 caaatttgaggcaaagata 119  Q
    |||| |||||||| |||||    
T  56209821 caaaattgaggcagagata 56209839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 45863465 - 45863577
Alignment:
Q  1 tcgaatttcatcgagtttagcccaaccgcaatttaaattgtgaatataaagatatacagcagaaatacgaggatcataagctgctttcaagaaattatcg 100  Q
    ||||||||||||   |||||||||||| ||||||||||| | ||| | ||||||||| |||||||||||||||||||||||||||||||| ||||||||     
T  45863465 tcgaatttcatcagctttagcccaaccacaatttaaattatcaatttgaagatatacggcagaaatacgaggatcataagctgctttcaacaaattatct 45863564  T
Q  101 caaatttgaggca 113  Q
    |||||||| ||||    
T  45863565 caaatttggggca 45863577  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 47292478 - 47292357
Alignment:
Q  1 tcgaatttcatcgagtttagcccaaccgcaatttaaattgtgaatataaagatatacagcagaaatacgaggatcataagctgctttcaagaaattatcg 100  Q
    ||||||||||| ||||||||||||||| |||||||||   | ||||| |||| | || |||||||||||| ||||||| || |||||||| |||||||||    
T  47292478 tcgaatttcat-gagtttagcccaaccacaatttaaacgataaatatgaagacacactgcagaaatacgatgatcatatgcggctttcaacaaattatcg 47292380  T
Q  101 caaatttgaggcaaagataatac 123  Q
    |||||| |||||| |||| ||||    
T  47292379 caaattcgaggcagagatgatac 47292357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 56209939 - 56210007
Alignment:
Q  230 gtcttgagcttaacaagaaatttgttgaagccggtagggggttcgaaattgaagtcaccggtgggataa 298  Q
    |||||||||||||| |||||||| |||||||||||| ||||  |||||||||||||||| |||||||||    
T  56209939 gtcttgagcttaacgagaaattttttgaagccggtatggggcacgaaattgaagtcaccagtgggataa 56210007  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 54303393 - 54303285
Alignment:
Q  1 tcgaatttcatcgagtttagcccaaccgcaatttaaattgtgaatataaagatatacagcagaaatacgaggatcataagctgctttcaagaaattatcg 100  Q
    |||||||||||| |||||| |||||||    || ||||| || ||||  ||||||||| || ||||||||||||||||    |||||||| |||||||||    
T  54303393 tcgaatttcatctagtttaccccaaccagtgttcaaattttggatattgagatatacaacataaatacgaggatcatacatggctttcaacaaattatcg 54303294  T
Q  101 caaatttga 109  Q
    |||||||||    
T  54303293 caaatttga 54303285  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 10520332 - 10520215
Alignment:
Q  3 gaatttcatcgagtttagcccaaccgcaatttaaattgtgaatataaagatatacagcagaaatacgaggatcataagctgctttcaagaaattatcgca 102  Q
    |||| ||||| |||||||||||||| ||| |||||| ||  |||| |||||| ||||| ||||||| ||||||||| |||||||||||||||||| ||||    
T  10520332 gaatctcatcaagtttagcccaaccccaacttaaatggtcgatatgaagataaacagcggaaatacaaggatcatatgctgctttcaagaaattaccgca 10520233  T
Q  103 aatttgaggcaaagataa 120  Q
    ||||||||| | ||||||    
T  10520232 aatttgaggaagagataa 10520215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 35851587 - 35851471
Alignment:
Q  78 aagctgctttcaagaaattatcgcaaatttgaggcaaagataatacattgggatcacataatgtacgggagagctcgtcggatatcctaccttgcaaatt 177  Q
    |||| ||||||||||||||||||||||||| || || |||||||||||| | ||  |||||| ||   | |||||  ||||||||| |||||||||||||    
T  35851587 aagcggctttcaagaaattatcgcaaatttcagacagagataatacatttgaattgcataatatagccgtgagctgatcggatatcttaccttgcaaatt 35851488  T
Q  178 gattttcaatacacttc 194  Q
    |||||||||||||||||    
T  35851487 gattttcaatacacttc 35851471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 35803523 - 35803645
Alignment:
Q  1 tcgaatttcatcgagtttagcccaaccgcaatttaaattgtgaatataaagatatacagcagaaatacgaggatcataagctgctttcaagaaattatcg 100  Q
    |||||||||||| | ||| ||||| || |||| |||   |||||||| |||||| |  || |||||||||||||||||||| ||||||||||||| ||||    
T  35803523 tcgaatttcatcaaattttgcccagccacaatctaatgagtgaatatgaagataaatggcggaaatacgaggatcataagcggctttcaagaaataatcg 35803622  T
Q  101 caaatttgaggcaaagataatac 123  Q
    ||||||| ||||| |||||||||    
T  35803623 caaatttcaggcagagataatac 35803645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 10520158 - 10520101
Alignment:
Q  245 agaaatttgttgaagccggtagggggttcgaaattgaagtcaccggtgggataatctt 302  Q
    |||||||||||| ||||| |  |||||||||||||||||||||||||||| |||||||    
T  10520158 agaaatttgttgtagccgatgaggggttcgaaattgaagtcaccggtggggtaatctt 10520101  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 7973632 - 7973743
Alignment:
Q  3 gaatttcatcgagtttagcccaaccgcaatttaaattgtgaatataaagatatacagcagaaatacgaggatcataagctgctttcaagaaattatcgca 102  Q
    ||||||||||||||||||| |||| ||| ||||||   | ||||  || ||| |||||||||||||||||||||||||| |||||||| ||||| |||||    
T  7973632 gaatttcatcgagtttagctcaactgcattttaaaggataaataacaacatacacagcagaaatacgaggatcataagcggctttcaacaaattctcgca 7973731  T
Q  103 aatttgaggcaa 114  Q
    ||||||||||||    
T  7973732 aatttgaggcaa 7973743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 24348452 - 24348401
Alignment:
Q  60 cagaaatacgaggatcataagctgctttcaagaaattatcgcaaatttgagg 111  Q
    ||||||| ||||||||||| ||||||||||| ||||| ||||| ||||||||    
T  24348452 cagaaattcgaggatcataggctgctttcaaaaaattctcgcatatttgagg 24348401  T

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