View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_high_69 (Length: 301)

Name: NF17203_high_69
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17203_high_69
NF17203_high_69
[»] chr4 (5 HSPs)
chr4 (1-301)||(4071541-4071854)
chr4 (248-301)||(4191657-4191711)
chr4 (253-300)||(44610839-44610887)
chr4 (258-301)||(47970246-47970290)
chr4 (262-301)||(51044557-51044597)
[»] chr2 (6 HSPs)
chr2 (258-301)||(31461366-31461410)
chr2 (245-301)||(17952799-17952856)
chr2 (253-301)||(33087696-33087744)
chr2 (258-301)||(5998800-5998844)
chr2 (258-301)||(13864578-13864622)
chr2 (262-301)||(38239649-38239689)
[»] chr7 (2 HSPs)
chr7 (260-301)||(2223078-2223120)
chr7 (253-301)||(47004010-47004059)
[»] chr5 (3 HSPs)
chr5 (253-299)||(36542382-36542428)
chr5 (258-301)||(35095881-35095925)
chr5 (258-301)||(35135760-35135804)
[»] chr3 (2 HSPs)
chr3 (248-301)||(16790186-16790240)
chr3 (258-301)||(38462209-38462253)
[»] chr8 (2 HSPs)
chr8 (248-296)||(1666963-1667012)
chr8 (258-301)||(14482130-14482174)
[»] scaffold0590 (1 HSPs)
scaffold0590 (258-301)||(1172-1216)
[»] scaffold0352 (1 HSPs)
scaffold0352 (258-301)||(10991-11035)
[»] scaffold0275 (1 HSPs)
scaffold0275 (258-301)||(2759-2803)
[»] chr6 (1 HSPs)
chr6 (258-301)||(4248886-4248930)
[»] chr1 (2 HSPs)
chr1 (258-301)||(13037792-13037836)
chr1 (258-301)||(16982034-16982078)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 4071541 - 4071854
Alignment:
Q  1 aaagaggataagtggataacatcaagacaacaactataaatattcaattagatcattttctattgacgcgtttagacacaccaata-------------g 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||              |    
T  4071541 aaagaggataagtggataacatcaagacaacaactataaatattcaattagatgattttctattgacgcttttagacacaccaattccctattccacatg 4071640  T
Q  88 aacaatagaacaaatgttatactacttggaagttggaactacacaaaactcaatctaggttatacattaaattcacaaactaatgttaagtcggtagcct 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4071641 aacaatagaacaaatgttatactacttggaagttggaactacacaaaactcaatctaggttatacattaaattcacaaactaatgttaagtcgatagcct 4071740  T
Q  188 taagacattcaattaggtcatttgttccagctcaggccctatttggttagcaacattataaagcctttaccatataagtgtttatatataactatttcta 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4071741 taagacattcaattaggtcatttgttccagctcaggccctatttggttagcaacattataaaggctttaccatataagtgtttatatataactatttcta 4071840  T
Q  288 taacaaaagataaa 301  Q
    ||||||||||||||    
T  4071841 taacaaaagataaa 4071854  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 4191657 - 4191711
Alignment:
Q  248 aagcctttaccatataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    |||| |||| |||||||||| |||| ||||| |||||||||||||||||||||||    
T  4191657 aagcgtttatcatataagtgcttatgtataagctatttctataacaaaagataaa 4191711  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 44610839 - 44610887
Alignment:
Q  253 tttaccatataagtgtttatatat-aactatttctataacaaaagataa 300  Q
    |||| ||||||| ||||||||||| ||||||||| ||||||||||||||    
T  44610839 tttatcatataaatgtttatatatgaactatttcaataacaaaagataa 44610887  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 47970246 - 47970290
Alignment:
Q  258 catataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    |||||||||| |||| ||||| |||||||||||||||||||||||    
T  47970246 catataagtgcttatgtataagctatttctataacaaaagataaa 47970290  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 51044597 - 51044557
Alignment:
Q  262 taagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  51044597 taagtgtttatgtataagctatttctataacaaaagataaa 51044557  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 31461366 - 31461410
Alignment:
Q  258 catataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    |||||||||| |||||||||| |||||||||||||||||||||||    
T  31461366 catataagtggttatatataagctatttctataacaaaagataaa 31461410  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 17952856 - 17952799
Alignment:
Q  245 ataaagcctttaccatataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    |||||||  ||| |||||||| | |||||||||| |||||||||||||||||||||||    
T  17952856 ataaagcacttatcatataagagcttatatataagctatttctataacaaaagataaa 17952799  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 33087744 - 33087696
Alignment:
Q  253 tttaccatataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    |||| |||||||||||| |||||||| |||||||||||||||||||||||    
T  33087744 tttatcatataagtgtt-atatataagctatttctataacaaaagataaa 33087696  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 5998844 - 5998800
Alignment:
Q  258 catataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||||    
T  5998844 catataattgtttatatataagctatttttataacaaaagataaa 5998800  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 13864578 - 13864622
Alignment:
Q  258 catataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    ||||||||||||||| ||||| |||||||||||||||||| ||||    
T  13864578 catataagtgtttatgtataagctatttctataacaaaaggtaaa 13864622  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 38239689 - 38239649
Alignment:
Q  262 taagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  38239689 taagtgtttatgtataagctatttctataacaaaagataaa 38239649  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 2223078 - 2223120
Alignment:
Q  260 tataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  2223078 tataagtgtttatgtataagctatttctataacaaaagataaa 2223120  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 47004010 - 47004059
Alignment:
Q  253 tttaccatataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    |||| ||||||||||||||||| ||| ||||||||||||||| |||||||    
T  47004010 tttatcatataagtgtttatatgtaagctatttctataacaatagataaa 47004059  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 36542428 - 36542382
Alignment:
Q  253 tttaccatataagtgtttatatataactatttctataacaaaagata 299  Q
    |||| ||||||||||||||| |||| |||||||||||||||| ||||    
T  36542428 tttatcatataagtgtttatgtatagctatttctataacaaacgata 36542382  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 35095925 - 35095881
Alignment:
Q  258 catataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    |||||||||| |||||| ||| |||||||||||||||||||||||    
T  35095925 catataagtgcttatatttaaactatttctataacaaaagataaa 35095881  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 35135804 - 35135760
Alignment:
Q  258 catataagtgtttatatataac-tatttctataacaaaagataaa 301  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||    
T  35135804 catataagtgtttatgtataagatatttctataacaaaagataaa 35135760  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 16790240 - 16790186
Alignment:
Q  248 aagcctttaccatataagtgtttatatataact-atttctataacaaaagataaa 301  Q
    |||| |||| |||||||||| |||||||||| | |||||||||||||||||||||    
T  16790240 aagcgtttatcatataagtgcttatatataagttatttctataacaaaagataaa 16790186  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 38462209 - 38462253
Alignment:
Q  258 catataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||    
T  38462209 catataagtgtttatttataagctatttctataccaaaagataaa 38462253  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 1666963 - 1667012
Alignment:
Q  248 aagcctttaccatataagtgtttatatataa-ctatttctataacaaaag 296  Q
    |||| |||| ||||||||||||||||||||| |||||| |||||||||||    
T  1666963 aagcttttagcatataagtgtttatatataagctatttttataacaaaag 1667012  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 14482130 - 14482174
Alignment:
Q  258 catataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    |||||||||| |||| ||||| |||||||||||||||||||||||    
T  14482130 catataagtgcttatgtataaactatttctataacaaaagataaa 14482174  T

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Target: scaffold0590 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 1216 - 1172
Alignment:
Q  258 catataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    |||||||||| |||| ||||| |||||||||||||||||||||||    
T  1216 catataagtgcttatgtataagctatttctataacaaaagataaa 1172  T

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Target: scaffold0352 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 10991 - 11035
Alignment:
Q  258 catataagtgtttatatat-aactatttctataacaaaagataaa 301  Q
    ||||||||||||||||||| ||||||||||| || ||||||||||    
T  10991 catataagtgtttatatataaactatttctagaataaaagataaa 11035  T

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Target: scaffold0275 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 2759 - 2803
Alignment:
Q  258 catataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    |||||||||| |||| ||||| |||||||||||||||||||||||    
T  2759 catataagtgcttatgtataagctatttctataacaaaagataaa 2803  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 4248886 - 4248930
Alignment:
Q  258 catataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    |||||||||| |||||||||| ||||||| |||||||||||||||    
T  4248886 catataagtgcttatatataagctatttcaataacaaaagataaa 4248930  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 13037792 - 13037836
Alignment:
Q  258 catataagtgtttatatataa-ctatttctataacaaaagataaa 301  Q
    |||||||||| |||| ||||| |||||||||||||||||||||||    
T  13037792 catataagtgcttatgtataagctatttctataacaaaagataaa 13037836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 16982078 - 16982034
Alignment:
Q  258 catataagtgtttatatataac-tatttctataacaaaagataaa 301  Q
    ||||||||||||||| |||||| |||||| |||||||||||||||    
T  16982078 catataagtgtttatgtataacttatttcgataacaaaagataaa 16982034  T

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