View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_high_71 (Length: 299)
Name: NF17203_high_71
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_71 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 39241270 - 39241524
Alignment:
| Q |
16 |
aatatatggagatccaccagtccagaagaagtgcttgcaatgtttctggtggagctaagactgatgactgaaactcatctgaaaagaccaataagaaatg |
115 |
Q |
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| T |
39241270 |
aatatatggagatccaccagtccagaagaagtgcttgcaatgtttctggtggagctaagactgatgactgaaactcatctgaaacgaccaataagaaatg |
39241369 |
T |
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| Q |
116 |
ttgtgcttacagttccagtttcattcagttgtttccagctgacccgcctagagcatgcttgtgcgatggctggtcttcatgttcttaggctgatgcctga |
215 |
Q |
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| T |
39241370 |
ttgtgcttacagttccagtttcattcagt----------cgacccgcctagagcgtgcttgtgcgatggctggtcttcatgttcttaggctgatgcctga |
39241459 |
T |
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| Q |
216 |
accaacagctgtggcattgttatatgcacagcaacaacataaagcttttcaagaaactatgggca |
280 |
Q |
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| T |
39241460 |
accaacagctgtggcattgttatatgcacagcaacaacataaagcttttcaagaaactatgggca |
39241524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 807618 - 807876
Alignment:
| Q |
22 |
tggagatccaccagtccagaagaagtgcttgcaatgtttctggtggagctaagactgatgactgaaactcatctgaaaagaccaataagaaatgttgtgc |
121 |
Q |
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| T |
807618 |
tggagatccaccactcccgaagaagtccttgcaatgtttctggtggagttaagactgatgactgaaactcatctcaaacgaccgataagaaatgtggtgc |
807717 |
T |
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| Q |
122 |
ttacagttccagtttcattcagttgtttccagctgacccgcctagagcatgcttgtgcgatggctggtcttcatgttcttaggctgatgcctgaaccaac |
221 |
Q |
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| T |
807718 |
ttactgtgccggtttcattcagtcgcttccagctgacccgcttagagcgtgcttgcgcgatggctggtcttcatgttctcaggttgatgcctgaaccaac |
807817 |
T |
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| Q |
222 |
agctgtggcattgttatatgcacagcaacaacataaagcttttcaagaaactatgggca |
280 |
Q |
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| T |
807818 |
agcagtggcgttattatatggacagcaacaacagaaagcttctcaagaaactatgggca |
807876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 47880001 - 47879938
Alignment:
| Q |
83 |
ctgaaactcatctgaaaagaccaataagaaatgttgtgcttacagttccagtttcattcagttg |
146 |
Q |
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| T |
47880001 |
ctgaaactcaactgaaacgacggataagaaatgtagtgtttacagttccagtttccttcagttg |
47879938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 47842618 - 47842696
Alignment:
| Q |
174 |
ttgtgcgatggctggtcttcatgttcttaggctgatgcctgaaccaacagctgtggcattgttatatgcacagcaacaa |
252 |
Q |
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| T |
47842618 |
ttgtgcaaaggccggtctttatgatctcaagctgatgcctcaaccaacagcagtggctttgttgtatgcacagcaacaa |
47842696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 44728301 - 44728220
Alignment:
| Q |
172 |
gcttgtgcgatggctggtcttcatgttcttaggctgatgcctgaaccaacagctgtggcattgttatatgcacagcaacaac |
253 |
Q |
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| T |
44728301 |
gcttgtgagatggccggtctaaaagttattagactgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaac |
44728220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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