View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17203_high_81 (Length: 280)
Name: NF17203_high_81
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_81 |
 | |
|
| [»] scaffold0128 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0128 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 9080 - 8829
Alignment:
| Q |
13 |
aatatacatagataatcacacaattgaaaccaagttcatgagttaacataaatttcaacatgaaataacatcaatattgaattgcaaatgcattatatgc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9080 |
aatatacatagataatcacacaattgaaaccaagttcatgagttaacataaatttaaacatgaaataacatcaatattgaattgcaaatgcattatatgc |
8981 |
T |
|
| Q |
113 |
ttaaactatacatagatgattgacttttaaacatggtaataggatatgtcagttcattaaacgtattaatctagaaattcatacaagtatatctagaagt |
212 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8980 |
ttaaactatacatagatgattgagttttaaacatggtaatagaatatgtcggttcattaaacgtattaatctagaaattcatacaagtatatctagaagt |
8881 |
T |
|
| Q |
213 |
gaagaaaaacttacgtttaacggattaaaaccaagctttcgacataatcgtg |
264 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8880 |
gaagaaaaacttacgttcaacggattaaaaccaagctttcgacataatcgtg |
8829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 142 - 261
Target Start/End: Complemental strand, 26000 - 25881
Alignment:
| Q |
142 |
aacatggtaataggatatgtcagttcattaaacgtattaatctagaaattcatacaagtatatctagaagtgaagaaaaacttacgtttaacggattaaa |
241 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| || | || |||| ||||||||| ||| ||||||||||||||||| || ||| ||||||| |
|
|
| T |
26000 |
aacatggtaataggatatgttagttcattaaacatatttatacataacttcacacaagtatagctatgagtgaagaaaaacttactttcaacagattaaa |
25901 |
T |
|
| Q |
242 |
accaagctttcgacataatc |
261 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25900 |
accaagctttcgacataatc |
25881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 26084 - 26007
Alignment:
| Q |
24 |
ataatcacacaattgaaaccaagttcatgagttaacataaatttcaacatgaaataacatcaatattgaattgcaaatg |
102 |
Q |
| |
|
|||||||||||||||| || || || |||| |||||| |||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
26084 |
ataatcacacaattgacacaaattt-atgaattaacacaaatttaaacctgaaataacatcaatattgaattgcaaatg |
26007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 24 - 251
Target Start/End: Original strand, 22472726 - 22472950
Alignment:
| Q |
24 |
ataatcacacaattgaaaccaagttcatgagttaacataaatttcaacatgaaataacatcaatattgaattgcaaatgcattatatgcttaaactatac |
123 |
Q |
| |
|
||||||||||||| |||||||||| |||| |||| |||||||| |||| |||||||||||||||||| |||||||||| ||||||||||||| ||||| |
|
|
| T |
22472726 |
ataatcacacaat--aaaccaagttgatgaattaatataaatttaaacaggaaataacatcaatattgcattgcaaatgtattatatgcttaa-ctatat |
22472822 |
T |
|
| Q |
124 |
atagatgattgacttttaaacatggtaataggatatgtcagttcattaaacgtattaatctagaaattcatacaagtatatctagaagtgaagaaaaact |
223 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||| | ||||||||||| |||| ||| | || |||||||||||||||||| ||||||||| ||||| |
|
|
| T |
22472823 |
atagatgattgagttttaaacatggtaatagaatattccggttcattaaacatattcatccataatttcatacaagtatatctataagtgaagataaact |
22472922 |
T |
|
| Q |
224 |
tacgtttaacggattaaaaccaagcttt |
251 |
Q |
| |
|
||| || ||| |||||||||||| |||| |
|
|
| T |
22472923 |
tactttcaacagattaaaaccaatcttt |
22472950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University