View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_high_96 (Length: 250)
Name: NF17203_high_96
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_high_96 |
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| [»] scaffold0128 (3 HSPs) |
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Alignment Details
Target: scaffold0128 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 73 - 239
Target Start/End: Original strand, 9174 - 9340
Alignment:
| Q |
73 |
gatgttgaatctagttgttaataatacatgaaacccttgagtcacttttggtatacatacttgcattattgaatctcagtaaaagctaatttcttcgact |
172 |
Q |
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| T |
9174 |
gatgttgaatctagttgttaataatacatgaaacccttgactcacttttggtatacatacttgcattattgtatctcagtagaagctaatttcttcgact |
9273 |
T |
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| Q |
173 |
tttttcacaaagggatatgactgcactttgagaataagaccttcacttttcatgtgtctttgttctt |
239 |
Q |
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| T |
9274 |
tttttcacaaatggatatgactgcactttgagaataagaccttcacttttcatgtgtctttgttctt |
9340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26813 - 27049
Alignment:
| Q |
1 |
atttacaccaattcaattacactatttttggaagggaaaattgtttatttctatagatgataatgatatatcgatgttgaatctagttgttaataataca |
100 |
Q |
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| T |
26813 |
atttacaccaattcagttacactattttag-aagggagaattgtttagttctatagatgataatgatatatcgatgttgaatctagttgttagta--aca |
26909 |
T |
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| Q |
101 |
tgaaacccttgagtcacttttggtatacatacttgcattattgaatctcagtaaaagctaatttcttcgacttttttcacaaagggatatgac---tgca |
197 |
Q |
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| T |
26910 |
tgaaaagcttgagtcacttttg--ctacataattgcattattctatctcagtagaagctaatttcttcgacttttttcacaaagggatgtgactagtgca |
27007 |
T |
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| Q |
198 |
ctttgagaataagaccttcacttttcatgtgtctttgttctt |
239 |
Q |
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| T |
27008 |
ctttgcgaataaggccttcacttttcatgtgtctttgttctt |
27049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9132 - 9174
Alignment:
| Q |
1 |
atttacaccaattcaattacactatttttggaagggaaaattg |
43 |
Q |
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| T |
9132 |
atttacaccaattaaattacactatttttggaagggaaaattg |
9174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 22472521 - 22472454
Alignment:
| Q |
99 |
catgaaacccttgagtcacttttggtatacatacttgcattattgaatctcagtaaaagctaatttcttc |
168 |
Q |
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| T |
22472521 |
catgaaaccgttgagtcacttttgcta--catacttgcattattatatctcagtagaagctaatttcttc |
22472454 |
T |
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