View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_10 (Length: 669)
Name: NF17203_low_10
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 609; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 8 - 669
Target Start/End: Complemental strand, 2572846 - 2572175
Alignment:
| Q |
8 |
ccaagaatatataatacacatgattgttcataaagaatttatatcaaaaaacactcacatatatagagcattgtataaagttatattgggcctagtgcaa |
107 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2572846 |
ccaaaaatatataatacacatgattgtttgtaaagaatttatatcaaaaaacactcacatatatagagcagtgtataaagttatattgggcctagtgcaa |
2572747 |
T |
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| Q |
108 |
aattgtagttaaagtttatgccatgtcatatatatata----------cattttgagtcttgccatcagagagagccgagtctcccctccacttcactct |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572746 |
aattgtagttaaagtttatgccatgtcatatatatatatatttatatacattttgagtcttgccatcagagagagccgagtctcccctccacttcactct |
2572647 |
T |
|
| Q |
198 |
ttggtccttaggcaactttcctgagcgttgtccttcaaaaaacatgatggctttgccaagagcatctgcatagtcgtaattagccgaggaatttgtacta |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572646 |
ttggtccttaggcaactttcctgagcgttgtccttcaaaaaacaagatggctttgccaagagcatctgcatagtcgtaattagccgaggaatttgtacta |
2572547 |
T |
|
| Q |
298 |
atgaattcatcatccgttatggctaataatccattccaactacccatgacaaataacaagatcaaactattgatcaacaaactgcacctcatgatggttc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572546 |
atgaattcatcatccgttatggctaataatccattccaactacccatgacaaataacaagatcaaactattgatcaacaaactgcacctcatgatggttc |
2572447 |
T |
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| Q |
398 |
tattaagtttctaagtctgcatgatattcaacgaaactttctggtatttatagtaggaaaaaatatggcagttgcctaactatgcctaactaccattacc |
497 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572446 |
tattaagtttctaagtctgcatgatattcaactaaactttctggtatttatagtaggaaaaaatatggcagttgcctaactatgcctaactaccattacc |
2572347 |
T |
|
| Q |
498 |
tcaaataggataggaatgtacaaagtagtgaatgtgtatgagaaagattataaaatatggaatggggggtaacttgacgtgtacatataacaattaaagt |
597 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572346 |
tcaaataggataggaatgtacaaagtagtgcatgtgtatgagaaagattataaaatatggaatggggggtaacttgacgtgtacatataacaattaaagt |
2572247 |
T |
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| Q |
598 |
catagtaaatgagtcatggagatggtatacttatatattaatcacgaagaaatgaacaatagccattcccct |
669 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572246 |
catagtaaatgagtcatggagatggtatacttatatattaatcacgaagaaatgaacaatagccattcccct |
2572175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 136 - 394
Target Start/End: Complemental strand, 2562180 - 2561919
Alignment:
| Q |
136 |
tatatatatacattttgagtcttgccatcagagagagccgagtctcccctccacttcactctttggtccttaggcaactttcctgagcgttgtccttcaa |
235 |
Q |
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||||||| |||||||||||| |||||||||||||| || || |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |
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| T |
2562180 |
tatatatgtacattttgagttttgccatcagagagtgctgaatctcccctccacttcactctttggtctttaggcaatttccctgagcgttgtccttcaa |
2562081 |
T |
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| Q |
236 |
aaaacatgatggctttgccaagagcatctgcatagtcgtaattagccgaggaatttgtactaatgaattcatcatccgttatggctaataatcc---att |
332 |
Q |
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|||||| ||| ||||||||||||||||||||||||| |||| | | |||||| || ||||||| ||||| |||||| |||| ||||||| || ||| |
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| T |
2562080 |
aaaacaagattgctttgccaagagcatctgcatagttgtaacttgatgaggaacttttactaattaattcctcatccattattgctaatataccattatt |
2561981 |
T |
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| Q |
333 |
ccaactacccatgacaaataacaagatcaaactattgatcaacaaactgcacctcatgatgg |
394 |
Q |
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| ||||| |||| |||| ||||||| |||| | | |||||||||||||||| |||||||| |
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| T |
2561980 |
cttactactcatggcaaaccacaagattaaaccacttatcaacaaactgcaccccatgatgg |
2561919 |
T |
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