View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_104 (Length: 249)
Name: NF17203_low_104
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_104 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 41 - 233
Target Start/End: Complemental strand, 1464227 - 1464035
Alignment:
| Q |
41 |
tgcaagtgcacgaggctatcatcaagcggagtatggacaaggtagatatgtacgcggccttatccctgcaaacagataggttatttccaatatttgaaca |
140 |
Q |
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| T |
1464227 |
tgcaagtgcacgaggctatcagcaagcggagtatggacaaggtagatatgtacgcggccttatccctgcaaacagataggttatttccaatatttgaaca |
1464128 |
T |
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| Q |
141 |
taagtcgacaaccttacagttgcacaaaggcttgtccttatcaacaatgtgacgaaatgataaagtgaaaaggaaaataacctaccttgtttt |
233 |
Q |
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| T |
1464127 |
taagtcgacaaccttacagttgcacaaaggcttgtccttatcaacaatgtgacgaaatgataaagtgaaaaagaaaataacctaccttgtttt |
1464035 |
T |
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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 211
Target Start/End: Complemental strand, 26791937 - 26791775
Alignment:
| Q |
41 |
tgcaagtgcacgaggctatcatcaagcggagtatggacaaggtagatatgtacgcggccttatccctgcaaacagataggttatttccaatatttgaaca |
140 |
Q |
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||||||||||||||||| | ||||| ||||| ||| ||||||||| | ||| ||||||||||| ||| |||||| ||||||||||||||||||| |
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| T |
26791937 |
tgcaagtgcacgaggctcccgtcaagaggagttcggagaaggtagatgt---cgcagccttatccctacaagcagatatactatttccaatatttgaaca |
26791841 |
T |
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| Q |
141 |
taagtcgacaaccttacagttgcacaaaggcttgtccttatcaacaatgtgacgaaatgataaagtgaaaa |
211 |
Q |
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| T |
26791840 |
t--gtgaacaaccttagagttgcgccaaggctcgtccttatcaac---gtgaccaaatgataaagcgaaaa |
26791775 |
T |
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