View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_105 (Length: 248)
Name: NF17203_low_105
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_105 |
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| [»] chr4 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 4510229 - 4510466
Alignment:
| Q |
10 |
atgaactttaggtttatacagattgctcccactaactccttgaacgatgtctcacattactttgtagaatggaagtgaattttccaagttgaacacgagc |
109 |
Q |
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| T |
4510229 |
atgaattttaagtttatacatattgctccgacgaactcctt-aacgatatcccaaattacttcgtagaatggaagtgaatttttcaagttgaacacgagc |
4510327 |
T |
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| Q |
110 |
aaacaattaaaagtattgagaataaaaactcatttcatgcttctagatacccgctgaagactccatgcataaccaggttatgtcagaggtggtactcatt |
209 |
Q |
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| T |
4510328 |
aaacaattaaaagcattgagaataaaaactcatttcctgcttctagatacccgccgaagtctccatacataactatgttatgtcagaggtaatactcatt |
4510427 |
T |
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| Q |
210 |
atttacacacagataattgcactatatttacatgaatta |
248 |
Q |
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| T |
4510428 |
atttacacacagataattacactatatttacatgaatta |
4510466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 4507618 - 4507467
Alignment:
| Q |
11 |
tgaactttaggtttatacagattgctcccactaactccttgaacgatgtctcacattactttgtagaatggaagtgaattttccaagttgaacacgagca |
110 |
Q |
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| T |
4507618 |
tgaactttatgtttatatagattgctcccacgaaatccttaaa-gatgtctcaaattacttcgtaaaatggaagtggattttccaaattgaacacgagca |
4507520 |
T |
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| Q |
111 |
aacaattaaaagtattgagaataaaaactcatttcatgcttctagatacccgc |
163 |
Q |
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| T |
4507519 |
aacaattaaaagcattgagaataaaaattcatttccagcttctaaatacccgc |
4507467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 4507459 - 4507413
Alignment:
| Q |
202 |
tactcattatttacacacagataattgcactatatttacatgaatta |
248 |
Q |
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| T |
4507459 |
tactcattatttacatacagataattacactatatttacatgaatta |
4507413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 116 - 248
Target Start/End: Complemental strand, 34736480 - 34736348
Alignment:
| Q |
116 |
ttaaaagtattgagaataaaaactcatttcatgcttctagatacccgctgaagactccatgcataaccaggttatgtcagaggtggtactcattatttac |
215 |
Q |
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| T |
34736480 |
ttaaaagcattgagaataaaaacttatttccagcttctagatacccgctgaagactccatgcataaccaggttatgtcagaggtagtactcattatttac |
34736381 |
T |
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| Q |
216 |
acacagataattgcactatatttacatgaatta |
248 |
Q |
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| T |
34736380 |
acacagataattgcactatatttacatgaatta |
34736348 |
T |
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