View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17203_low_106 (Length: 245)
Name: NF17203_low_106
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_106 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 4507052 - 4507231
Alignment:
| Q |
16 |
cacacatgaagggaaacccatttaaaagtaaaacctaacataaatcatgactttgatgacaacttcattaacacttagaggtatctacaactgtaaatgg |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
4507052 |
cacacatggagggaaacccatttaaaagtaaaacctaacataaatcatgactttgatgacaacttcattaacacttag--gtatctataactgtaaatgt |
4507149 |
T |
|
| Q |
116 |
gtttgtatttaaacttcattaactaaaaacacaatttcaaggtcagaaattcatgtttttgctagagtgaaccgtaactgag |
197 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4507150 |
gtttgtatttaaacttcattaaccaaaaattcaatttcaaagtcagaaattcatgtttttgctagagtgaaccgtaactgag |
4507231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 37 - 243
Target Start/End: Complemental strand, 4510807 - 4510602
Alignment:
| Q |
37 |
ttaaaagtaaaacctaacataaatcatgactttgatgacaacttcattaacacttagaggtatctacaactgtaaatgggtttgtatttaaacttcatta |
136 |
Q |
| |
|
|||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
4510807 |
ttaaaactaaaatctaacataaatcatgattttgatgacaacttcattaacacttagaggtatctatacctgtaaatgagtttgtatttaaacttcatta |
4510708 |
T |
|
| Q |
137 |
actaaaaacacaatttcaaggtcagaaattcatgtttttgctagagtgaaccgtaactgagtacagagacatagtttacatactctggatcctctgccac |
236 |
Q |
| |
|
|| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||||||||| ||| |
|
|
| T |
4510707 |
accaaaaactcaatttcaaagtcagaaattcatgtttttgctagagtgaaccgtaactgagtacag-ggcatagaataaatactctggatcctctgtcac |
4510609 |
T |
|
| Q |
237 |
tttcctc |
243 |
Q |
| |
|
||||||| |
|
|
| T |
4510608 |
tttcctc |
4510602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 34736218 - 34736252
Alignment:
| Q |
211 |
tttacatactctggatcctctgccactttcctcct |
245 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34736218 |
tttacttactctggatcctctgccactttcctcct |
34736252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University