View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_11 (Length: 657)
Name: NF17203_low_11
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 347 - 640
Target Start/End: Complemental strand, 3620426 - 3620134
Alignment:
| Q |
347 |
attttataacgttgttcattgtaaacttttgattgatcaaatatcattgcttctnnnnnnnntatagtatattcattcggaattacattctccataaagc |
446 |
Q |
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| T |
3620426 |
attttataaggttgttcattgtaaacttttgattgatcaaatatcattgcttctaaaaaaa-tatagtatagtcattcggaattacattctctataaagc |
3620328 |
T |
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| Q |
447 |
ttgagtaaccttactgacctcaatcattcacaaaacgcacatttaaatagcacaaaaacttttaatttcttcaaaagtatacccgtatggataaatggtt |
546 |
Q |
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| T |
3620327 |
ttaagtaaccttagtgacctcagtcatacacaaaacgcacatttaaatagcacaaaagcttttaatttattcaaaagtatacccgtatggataaatggtt |
3620228 |
T |
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| Q |
547 |
tcataaacgcttattacaataaatacttacgtaaagctaattctataataaaagattnnnnnnngttaaattattttcataaaaactactctct |
640 |
Q |
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| T |
3620227 |
tcataaacgcttattacgataaatacttatgtaaagctaattctataataaaagattgaaaaaagttaaattattttcataaaaactactctct |
3620134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 3620762 - 3620558
Alignment:
| Q |
12 |
cagcacagaagaaaaagattccaattataggattttggtttggtttttgatggagaaagaaggtttatggtttgtatgtgtgtgttaagatgggtggttt |
111 |
Q |
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| T |
3620762 |
cagcacagaagaaaaagattccaattataggattttggtttggtttttgatggagaaagaaggtttatggtttgtgtgtgtgtgttaagatgggtggttt |
3620663 |
T |
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| Q |
112 |
gtggtagagtttgaagagacttgtttagtggggtatatctactttctttgtttctagaccacacaagtggtataatgaaaccgtggacaattttaggctt |
211 |
Q |
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| T |
3620662 |
gtggtagagtttg--gagacttgtttagtggggtatatctactttctttgtttctagaccacacaagtggtataatgaaatcgtggacaattttaggctt |
3620565 |
T |
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| Q |
212 |
tccaacc |
218 |
Q |
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||||||| |
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| T |
3620564 |
tccaacc |
3620558 |
T |
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