View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_111 (Length: 238)
Name: NF17203_low_111
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_111 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28657544 - 28657320
Alignment:
| Q |
1 |
ccagcaaatttgtaaatcaacactttgataatttcagcctgctaacttgcactcagattaggatagtttgatcggccctatgtcacgttctatttgcgcc |
100 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28657544 |
ccagcaaatttgtaaatcagcactttgacaatttcagcctgctaacttgcactcagattaggatagtttgatcggccctatgtcacgttctatttgcgcc |
28657445 |
T |
|
| Q |
101 |
accccacttaggacccaaataaga--gtgtcctctcaaatcacccatagaagagcaactcggtactatgaaactcttaccatgtccatgtccagggaaga |
198 |
Q |
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|||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
28657444 |
accccacttaggacccaaatgagagtgtgtcctctgaaatcacccatagaagagcaacccggtactatgaaactcttaccatgtccaggtccagggaaga |
28657345 |
T |
|
| Q |
199 |
gtgagatccattgttgattcattat |
223 |
Q |
| |
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||||||||||||||||||| ||||| |
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| T |
28657344 |
gtgagatccattgttgatttattat |
28657320 |
T |
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