View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_116 (Length: 228)
Name: NF17203_low_116
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_116 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 47694387 - 47694181
Alignment:
| Q |
4 |
tcttgaggagcagcacagagaagatagaagcagtggtagttacgttctgggtcattaacttggcaaacccgtgatctctcaagaaggtacgtacgaatgg |
103 |
Q |
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| T |
47694387 |
tcttgtggtgcagcacaaagaagatagaagcagtggtagttacgttctgggtcattaacttggcaaacccgtgatctctcaagaaggtacgtacgaatgg |
47694288 |
T |
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| Q |
104 |
ctgcgcctgagattcttccactcttatcaaattggatctcaacaaacttaccaaaacgactgcaccattaagagaatgatattttttaaactaataattg |
203 |
Q |
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| T |
47694287 |
ctgcgcctgagattcttccactcttatcaaattggatctcaacaaacttaccaaaacgactgcaccattaagagaatgatattttttaaactaataattg |
47694188 |
T |
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| Q |
204 |
gtaaaag |
210 |
Q |
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|||||| |
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| T |
47694187 |
ataaaag |
47694181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 35831503 - 35831655
Alignment:
| Q |
22 |
agaagatagaagcagtggtagttacgttctgggtcattaacttggcaaacccgtgatctctcaagaaggtacgtacgaatggctgcgcctgagattcttc |
121 |
Q |
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| T |
35831503 |
agaagataaaagcagtggtagtttcgttcaggatcattaatttgacagacccgagatctctctagaaggtatgttcggatggctgctcctgagattcttc |
35831602 |
T |
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| Q |
122 |
cactcttatcaaattggatctcaacaaacttaccaaaacgactgcaccattaa |
174 |
Q |
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| T |
35831603 |
cgctcttatcaaattggatctcaacaaatttaccaaaacggctgcaccattaa |
35831655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 31011261 - 31011420
Alignment:
| Q |
8 |
gaggagcagcacagagaagatagaagcagtggtagttacgttctgggtcattaacttggcaaacccgtgatctctcaagaaggtacgtacgaatggctgc |
107 |
Q |
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| T |
31011261 |
gaggagaagcacagagaaggtagaaacagtgataattacgctctggatctgagatttggcaaacacgagatttctcgagaagataagttctaatggctgc |
31011360 |
T |
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| Q |
108 |
gcctgagattcttccactcttatcaaattggatctcaacaaacttaccaaaacgactgca |
167 |
Q |
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| T |
31011361 |
accggatattcgtccatacttatcaaattgaatctcaacaaattttccaaaacggctgca |
31011420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 29902588 - 29902625
Alignment:
| Q |
130 |
tcaaattggatctcaacaaacttaccaaaacgactgca |
167 |
Q |
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| T |
29902588 |
tcaaattgaatctccacaaacttaccaaaacgactgca |
29902625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 26465537 - 26465431
Alignment:
| Q |
60 |
aacttggcaaacccgtgatctctcaagaaggtacgtacgaatggctgcgcctgagattcttccactcttatcaaattggatctcaacaaacttaccaaaa |
159 |
Q |
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|||||||||||| || ||||| ||||| ||||||||||| || || || || || || | ||| |||| |||||||| || |||||||||||||||||| |
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| T |
26465537 |
aacttggcaaacacgagatctttcaaggaggtacgtacggatcgcagctccagaaatcttcccattcttgtcaaattgaatttcaacaaacttaccaaaa |
26465438 |
T |
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| Q |
160 |
cgactgc |
166 |
Q |
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| T |
26465437 |
cgactgc |
26465431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 52154475 - 52154512
Alignment:
| Q |
130 |
tcaaattggatctcaacaaacttaccaaaacgactgca |
167 |
Q |
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| T |
52154475 |
tcaaattgtatctcaacaaatttaccaaaacgactgca |
52154512 |
T |
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