View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_12 (Length: 654)
Name: NF17203_low_12
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 51078785 - 51079267
Alignment:
| Q |
1 |
gaccaacatgtagccaaatgaacattgtttttgcccgcaggcatcagaagatgtattgcttctcttaagcatagcccattactccctcaccagcatttct |
100 |
Q |
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| T |
51078785 |
gaccaacatgtagccaaatgaacattgtttttgcccacaggcatcagaagatgtattgcttctcttaagcatagcccattactccctcaacagcatttct |
51078884 |
T |
|
| Q |
101 |
gcaacagaacgaatgcaattaggcaactaagttcaaagggggtgg--ataacaaataacttgacatcacactgctacagcaaacattcaaactgccccca |
198 |
Q |
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| T |
51078885 |
gcaacagaacaaatgcaattaggcaactaagttcaaagggggtggggataacaaat---------------tgctacagcaaacattcaaactgccccca |
51078969 |
T |
|
| Q |
199 |
ccccaaaatattgcaatgcttttgaaacccaagacttaaga---ttccaatgccaggcccaattgccagaaagaccacctgatgatcgctct-------- |
287 |
Q |
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| T |
51078970 |
ccccaaaatattgcaatgcttttgaaacccaagacttaagaagattccaatgccaggcccaattgccagaaagagcacctgatgatcgctctaccatatc |
51079069 |
T |
|
| Q |
288 |
-gcgagttcctagaaactaaaggtcaatgttcataagccttaagactgttgaacagcataactaattataccaac---cttggaaactgatattcttaaa |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
51079070 |
tgcgagttcctagaaactaaaggtcaatgttcataagccttaagactgttgaacagcataactaattataccaccacccttggaaactgatattcttaaa |
51079169 |
T |
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| Q |
384 |
tgtcttgtgttccatgtttgatatgccaaacctaaacagcagttaaaagaataaatattaaataggtaaagaatacctgatttctctatctctatctct |
482 |
Q |
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| T |
51079170 |
tgtcttgtgttccatgtttgatatgccaaacctaaaaagcagttaaaagaataaatgttaaataggt-aagaatacctgatttctctatctctatctct |
51079267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 505 - 638
Target Start/End: Original strand, 51079257 - 51079390
Alignment:
| Q |
505 |
tctctgtctctgctatcatgccttcgctgagagcgctccttctctcgttcactttcactccctcgattccttctatccctatctctcttcctatccccat |
604 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51079257 |
tctctatctctgctatcatgccttcgctgagagcgctccttctctcgttcactttcactccctcgattccttctatccctatctctcttcctatccccat |
51079356 |
T |
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| Q |
605 |
tgcccttagattttgaatgcttgaaccaatgatc |
638 |
Q |
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| T |
51079357 |
tgcccttagattttgaatgcttgaaccaatgatc |
51079390 |
T |
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