View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_low_120 (Length: 222)

Name: NF17203_low_120

Description: NF17203

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17203_low_120

[»] chr7 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 173; E-Value: 3e-93

Query Start/End: Original strand, 31 - 207

Target Start/End: Complemental strand, 33529457 - 33529281

Alignment:

Q	31	ggttggaacaatttgtataagatgctaatggaatcaatacatgttgaaactaaaacatagtgtcatcaatgggagggcctagatattcaattccatccat	130	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33529457	ggttggaacaatttgtataagatgctaatggaatcaatacatgttgaaactaaaacatagtgtcatcaatgggagggcctagatattcaattccatccat	33529358	T

Q	131	ttgacaattttctggcatatcaatttcttctaacaacgcataactatcatctttgtctttcacctcaccaatctttt	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33529357	ttgacaattttctggcatatcaatttcttctaacaacccataactatcatctttgtctttcacctcaccaatctttt	33529281	T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 30; E-Value: 0.00000007

Query Start/End: Original strand, 113 - 202

Target Start/End: Original strand, 9690242 - 9690331

Alignment:

Q	113	atattcaattccatccatttgacaattttctggcatatcaatttcttctaacaacgcataactatcatctttgtctttcacctcaccaat	202	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\| \|\|\|\|
T	9690242	atattcaatcccatccatttgagagttttctggcatctctatttcttccaaccatccataactttcattttcttctttcaactcagcaat	9690331	T

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