View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_121 (Length: 222)
Name: NF17203_low_121
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_121 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32229689 - 32229907
Alignment:
| Q |
1 |
ctttaccaagtttgattaattaacaaggacactaaacttgcattgccatcccttctaag--tattgtgtataagttagcactgtgtatcttatcatataa |
98 |
Q |
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| T |
32229689 |
ctttaccaagtttgattaattaataaggacactaaacttgc-----catcccttttaagagtattgtgtataagttagcactgtgtatcttatcatataa |
32229783 |
T |
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| Q |
99 |
tctataggataggatatactaagttggatccaatatgtaaggtaatagagttatgctctttactttactgatcctgcctctgtttatatttttcttaatt |
198 |
Q |
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| T |
32229784 |
tctataggataggatatactaagttggatccaatatgtaaggtaacagagttatgctctttactttactgatcctgcctctgtttatatttttcttaatt |
32229883 |
T |
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| Q |
199 |
ctgttgcatatatattattcaatt |
222 |
Q |
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| T |
32229884 |
ctgttgcatatatattattcaatt |
32229907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 32224899 - 32225062
Alignment:
| Q |
63 |
tgtgtataagttagcactgtgtatcttatcatataatctataggataggatatactaagttggatccaatatgtaaggtaatagagttatgctctttact |
162 |
Q |
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| T |
32224899 |
tgtgtataagttagcactgtgtatcttatcatataaactataggataggatatactaagttggatccaatatgtaaggtaacagagctctgctcttcact |
32224998 |
T |
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| Q |
163 |
ttactgatcctgcctc----tgtttatatttttcttaattctgttgcatatatattattcaatt |
222 |
Q |
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| T |
32224999 |
ttactgatcctgcctctgattgtttatgtttttcctaattctgttgcatatttattattcaatt |
32225062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 32220388 - 32220424
Alignment:
| Q |
84 |
tatcttatcatataatctataggataggatatactaa |
120 |
Q |
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| T |
32220388 |
tatcttatcatgtaatctataggataggatatactaa |
32220424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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