View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17203_low_123 (Length: 219)
Name: NF17203_low_123
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_123 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 48286400 - 48286618
Alignment:
| Q |
1 |
aacgtaattattgtcgcctatgttgttgcacattttgcatcatcttcctcattctcttcttccttttcatcctcgccgccgcagttatctacattctcta |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48286400 |
aacgtaattattgtcgcctattttgttgcacattttgcatcatcttcctcattctcttcttccttttcatcctcgccgccgcagttatctacattctcta |
48286499 |
T |
|
| Q |
101 |
tcaaccttccataccagaattccacctcggttccttccgtgttccaagtttcaacataaccacaaaatccgacggtgcttatctcgacgcaaacacggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
48286500 |
ccaaccttccataccagaattccacctcggttctttccgtgttccaagtttcaacataaccacaaaatccgacggtgcttatctcgacgcaaacacgata |
48286599 |
T |
|
| Q |
201 |
acaatggtggaagtgaaga |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
48286600 |
acaatggtggaagtgaaga |
48286618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University