View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_low_125 (Length: 215)

Name: NF17203_low_125
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17203_low_125
NF17203_low_125
[»] chr4 (9 HSPs)
chr4 (19-186)||(36087857-36088025)
chr4 (69-103)||(313657-313691)
chr4 (69-103)||(1638517-1638551)
chr4 (69-103)||(22128345-22128379)
chr4 (69-103)||(34557253-34557287)
chr4 (69-102)||(6553875-6553908)
chr4 (69-102)||(32175770-32175803)
chr4 (69-102)||(46286262-46286295)
chr4 (71-103)||(18714972-18715004)
[»] chr6 (6 HSPs)
chr6 (69-102)||(9060163-9060196)
chr6 (69-103)||(12351619-12351653)
chr6 (69-103)||(33547618-33547652)
chr6 (69-102)||(5360482-5360515)
chr6 (69-102)||(9885316-9885349)
chr6 (71-103)||(28668172-28668204)
[»] chr1 (8 HSPs)
chr1 (69-102)||(9882073-9882106)
chr1 (69-102)||(46865316-46865349)
chr1 (69-103)||(12720881-12720915)
chr1 (69-103)||(16913610-16913644)
chr1 (69-103)||(41063269-41063303)
chr1 (70-103)||(6775959-6775992)
chr1 (69-102)||(17661123-17661156)
chr1 (71-103)||(38531205-38531237)
[»] scaffold0284 (1 HSPs)
scaffold0284 (69-103)||(1552-1586)
[»] chr8 (5 HSPs)
chr8 (69-103)||(2265411-2265445)
chr8 (69-103)||(9631474-9631508)
chr8 (69-103)||(26399040-26399074)
chr8 (69-103)||(41527733-41527767)
chr8 (69-102)||(19256283-19256316)
[»] chr7 (4 HSPs)
chr7 (69-103)||(1907427-1907461)
chr7 (69-103)||(11890180-11890214)
chr7 (72-102)||(38090336-38090366)
chr7 (69-103)||(48933208-48933242)
[»] chr5 (5 HSPs)
chr5 (69-99)||(10420285-10420315)
chr5 (69-103)||(16121872-16121906)
chr5 (69-103)||(20187974-20188008)
chr5 (69-103)||(23974609-23974643)
chr5 (69-102)||(13620160-13620193)
[»] chr3 (6 HSPs)
chr3 (69-103)||(17582334-17582368)
chr3 (69-103)||(20761983-20762017)
chr3 (69-103)||(21020133-21020167)
chr3 (69-103)||(28390041-28390075)
chr3 (69-103)||(46012761-46012795)
chr3 (69-102)||(5565791-5565824)
[»] chr2 (3 HSPs)
chr2 (69-99)||(13134653-13134683)
chr2 (69-102)||(8430365-8430398)
chr2 (69-102)||(22192248-22192281)
[»] scaffold0087 (1 HSPs)
scaffold0087 (69-102)||(37820-37853)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 36088025 - 36087857
Alignment:
Q  19 attataagtctcgtagggattgattacgcagcgagatgaatcagtatgttttagtgacggaaaaaataaaatccctcacaaattcagcaatcacgagaca 118  Q
    |||||||| | |||| |||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36088025 attataagccacgtacggattgattgtgcagcgtgatgaatcagtatgttttagtgacggaaaaaataaaatccctcacaaattcagcaatcacgagaca 36087926  T
Q  119 ggtggatcgttagccataaca-ggtagagaagtgatgatcaagttgatgatacaatctattcctacata 186  Q
    ||||||||||||||||||| | || | |||||||||||||||||||||||| |||||||||||||||||    
T  36087925 ggtggatcgttagccataaaagggaaaagaagtgatgatcaagttgatgatgcaatctattcctacata 36087857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 313691 - 313657
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||||||||| ||||||    
T  313691 ttagtgacggaaaaaataaaatccctcataaattc 313657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 1638551 - 1638517
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||||||||||| ||||    
T  1638551 ttagtgacggaaaaaataaaatccctcacatattc 1638517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 22128345 - 22128379
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    ||||||||||||||||||||||| |||||||||||    
T  22128345 ttagtgacggaaaaaataaaatctctcacaaattc 22128379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 34557287 - 34557253
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||||| ||||||||||    
T  34557287 ttagtgacggaaaaaataaaatccttcacaaattc 34557253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 6553908 - 6553875
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaatt 102  Q
    |||||||||||||||||||||||||||| |||||    
T  6553908 ttagtgacggaaaaaataaaatccctcataaatt 6553875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 32175770 - 32175803
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaatt 102  Q
    |||||||||||||||||||||| |||||||||||    
T  32175770 ttagtgacggaaaaaataaaattcctcacaaatt 32175803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 46286262 - 46286295
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaatt 102  Q
    |||||||||||||||||||||| |||||||||||    
T  46286262 ttagtgacggaaaaaataaaattcctcacaaatt 46286295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 18715004 - 18714972
Alignment:
Q  71 agtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||| ||||||||||||    
T  18715004 agtgacggaaaaaataaaattcctcacaaattc 18714972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 9060196 - 9060163
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaatt 102  Q
    ||||||||||||||||||||||||||||||||||    
T  9060196 ttagtgacggaaaaaataaaatccctcacaaatt 9060163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 12351619 - 12351653
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||| ||||||||||||    
T  12351619 ttagtgacggaaaaaataaaattcctcacaaattc 12351653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 33547652 - 33547618
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||| ||||||||||||||||||||||||||||||    
T  33547652 ttagggacggaaaaaataaaatccctcacaaattc 33547618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 5360515 - 5360482
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaatt 102  Q
    |||||||||||||||||||||| |||||||||||    
T  5360515 ttagtgacggaaaaaataaaattcctcacaaatt 5360482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 9885349 - 9885316
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaatt 102  Q
    ||||||||||||||||||||||| ||||||||||    
T  9885349 ttagtgacggaaaaaataaaatctctcacaaatt 9885316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 28668204 - 28668172
Alignment:
Q  71 agtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||| ||||||||||||    
T  28668204 agtgacggaaaaaataaaattcctcacaaattc 28668172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 9882073 - 9882106
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaatt 102  Q
    ||||||||||||||||||||||||||||||||||    
T  9882073 ttagtgacggaaaaaataaaatccctcacaaatt 9882106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 46865349 - 46865316
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaatt 102  Q
    ||||||||||||||||||||||||||||||||||    
T  46865349 ttagtgacggaaaaaataaaatccctcacaaatt 46865316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 12720915 - 12720881
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||| ||||||||||||    
T  12720915 ttagtgacggaaaaaataaaattcctcacaaattc 12720881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 16913610 - 16913644
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||| ||||||||||||    
T  16913610 ttagtgacggaaaaaataaaattcctcacaaattc 16913644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 41063303 - 41063269
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||||||||||| ||||    
T  41063303 ttagtgacggaaaaaataaaatccctcacatattc 41063269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 6775992 - 6775959
Alignment:
Q  70 tagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||| |||||||||||||||||||||||||||    
T  6775992 tagtgatggaaaaaataaaatccctcacaaattc 6775959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 17661156 - 17661123
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaatt 102  Q
    |||||||||||||||||||||| |||||||||||    
T  17661156 ttagtgacggaaaaaataaaattcctcacaaatt 17661123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 38531205 - 38531237
Alignment:
Q  71 agtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||| ||||||||||||    
T  38531205 agtgacggaaaaaataaaattcctcacaaattc 38531237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 1552 - 1586
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||||||||| ||||||    
T  1552 ttagtgacggaaaaaataaaatccctcataaattc 1586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 2265411 - 2265445
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||||| ||||||||||    
T  2265411 ttagtgacggaaaaaataaaatccttcacaaattc 2265445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 9631508 - 9631474
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||| ||||||||||||    
T  9631508 ttagtgacggaaaaaataaaattcctcacaaattc 9631474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 26399040 - 26399074
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    ||||||||||||||||||||||| |||||||||||    
T  26399040 ttagtgacggaaaaaataaaatctctcacaaattc 26399074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 41527733 - 41527767
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||||||||| ||||||    
T  41527733 ttagtgacggaaaaaataaaatccctcataaattc 41527767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 19256316 - 19256283
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaatt 102  Q
    |||||||||||||||||||||| |||||||||||    
T  19256316 ttagtgacggaaaaaataaaattcctcacaaatt 19256283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 1907461 - 1907427
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||||||||||| ||||    
T  1907461 ttagtgacggaaaaaataaaatccctcacatattc 1907427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 11890180 - 11890214
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||||||||| ||||||    
T  11890180 ttagtgacggaaaaaataaaatccctcataaattc 11890214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 102
Target Start/End: Complemental strand, 38090366 - 38090336
Alignment:
Q  72 gtgacggaaaaaataaaatccctcacaaatt 102  Q
    |||||||||||||||||||||||||||||||    
T  38090366 gtgacggaaaaaataaaatccctcacaaatt 38090336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 48933242 - 48933208
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||| ||||||||||||    
T  48933242 ttagtgacggaaaaaataaaattcctcacaaattc 48933208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 99
Target Start/End: Original strand, 10420285 - 10420315
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaa 99  Q
    |||||||||||||||||||||||||||||||    
T  10420285 ttagtgacggaaaaaataaaatccctcacaa 10420315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 16121872 - 16121906
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||| ||||||||||||    
T  16121872 ttagtgacggaaaaaataaaattcctcacaaattc 16121906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 20187974 - 20188008
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||| ||||||||||||    
T  20187974 ttagtgacggaaaaaataaaattcctcacaaattc 20188008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 23974609 - 23974643
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    ||||||||||||||||||||||| |||||||||||    
T  23974609 ttagtgacggaaaaaataaaatctctcacaaattc 23974643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 13620160 - 13620193
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaatt 102  Q
    ||||||||||||||||||||||| ||||||||||    
T  13620160 ttagtgacggaaaaaataaaatctctcacaaatt 13620193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 17582334 - 17582368
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    |||||||||||||||||||||| ||||||||||||    
T  17582334 ttagtgacggaaaaaataaaattcctcacaaattc 17582368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 20761983 - 20762017
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    ||||||||||||||||||||||| |||||||||||    
T  20761983 ttagtgacggaaaaaataaaatctctcacaaattc 20762017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 21020167 - 21020133
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    ||||||||||||||||||||||| |||||||||||    
T  21020167 ttagtgacggaaaaaataaaatctctcacaaattc 21020133  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Complemental strand, 28390075 - 28390041
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    ||||||||||||||||||||||| |||||||||||    
T  28390075 ttagtgacggaaaaaataaaatctctcacaaattc 28390041  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 46012761 - 46012795
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaattc 103  Q
    ||||||||||||||||||||||| |||||||||||    
T  46012761 ttagtgacggaaaaaataaaatctctcacaaattc 46012795  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 5565824 - 5565791
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaatt 102  Q
    ||||||||||||||||||||||| ||||||||||    
T  5565824 ttagtgacggaaaaaataaaatctctcacaaatt 5565791  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 99
Target Start/End: Original strand, 13134653 - 13134683
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaa 99  Q
    |||||||||||||||||||||||||||||||    
T  13134653 ttagtgacggaaaaaataaaatccctcacaa 13134683  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 8430398 - 8430365
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaatt 102  Q
    |||||||||||||||||||||| |||||||||||    
T  8430398 ttagtgacggaaaaaataaaattcctcacaaatt 8430365  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 22192281 - 22192248
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaatt 102  Q
    ||||||||||||||||||||||| ||||||||||    
T  22192281 ttagtgacggaaaaaataaaatctctcacaaatt 22192248  T

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Target: scaffold0087 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 37820 - 37853
Alignment:
Q  69 ttagtgacggaaaaaataaaatccctcacaaatt 102  Q
    |||||||||||||||||||||| |||||||||||    
T  37820 ttagtgacggaaaaaataaaattcctcacaaatt 37853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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