View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_low_126 (Length: 214)

Name: NF17203_low_126
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17203_low_126
NF17203_low_126
[»] chr4 (38 HSPs)
chr4 (119-214)||(48870404-48870499)
chr4 (119-214)||(48886090-48886185)
chr4 (125-214)||(48875708-48875797)
chr4 (121-214)||(50250910-50251003)
chr4 (46-165)||(48898630-48898752)
chr4 (123-214)||(45372191-45372282)
chr4 (121-210)||(48170700-48170789)
chr4 (48-98)||(48147752-48147802)
chr4 (50-100)||(48735419-48735469)
chr4 (121-163)||(48852576-48852618)
chr4 (121-211)||(48705479-48705571)
chr4 (121-210)||(49044316-49044405)
chr4 (124-179)||(48863126-48863181)
chr4 (50-97)||(50250818-50250865)
chr4 (46-96)||(7877727-7877777)
chr4 (50-166)||(49041201-49041320)
chr4 (121-214)||(37827114-37827207)
chr4 (121-214)||(48891274-48891367)
chr4 (46-94)||(7908325-7908373)
chr4 (50-102)||(45384905-45384957)
chr4 (54-102)||(48902924-48902972)
chr4 (121-176)||(33133934-33133989)
chr4 (123-162)||(50672412-50672451)
chr4 (125-210)||(47207762-47207847)
chr4 (50-102)||(48705396-48705448)
chr4 (53-97)||(49048613-49048657)
chr4 (37-97)||(50669052-50669112)
chr4 (53-96)||(7237763-7237806)
chr4 (53-96)||(7771396-7771439)
chr4 (53-96)||(7790081-7790124)
chr4 (121-212)||(50668916-50669007)
chr4 (52-97)||(48852663-48852708)
chr4 (52-97)||(48870539-48870584)
chr4 (52-97)||(48875843-48875888)
chr4 (52-97)||(48886225-48886270)
chr4 (121-166)||(49048704-49048749)
chr4 (50-102)||(45366243-45366295)
chr4 (18-94)||(48863214-48863290)
[»] chr1 (6 HSPs)
chr1 (51-213)||(24367025-24367190)
chr1 (124-212)||(24310047-24310135)
chr1 (50-97)||(24340405-24340452)
chr1 (50-97)||(24352770-24352817)
chr1 (15-102)||(24310163-24310250)
chr1 (50-97)||(24369477-24369524)
[»] chr5 (7 HSPs)
chr5 (15-214)||(42562342-42562544)
chr5 (50-102)||(29696198-29696250)
chr5 (126-176)||(29688011-29688061)
chr5 (54-102)||(179026-179074)
chr5 (123-175)||(29696113-29696165)
chr5 (134-214)||(29712599-29712679)
chr5 (125-168)||(29261158-29261201)
[»] chr6 (4 HSPs)
chr6 (121-210)||(21015672-21015761)
chr6 (121-214)||(21979770-21979863)
chr6 (54-97)||(21015806-21015849)
chr6 (53-97)||(21979678-21979722)
[»] chr3 (5 HSPs)
chr3 (122-214)||(47452028-47452120)
chr3 (54-97)||(11005994-11006037)
chr3 (123-210)||(11015641-11015728)
chr3 (54-97)||(11024569-11024612)
chr3 (54-97)||(11015557-11015600)
[»] chr7 (2 HSPs)
chr7 (125-168)||(30120435-30120478)
chr7 (121-214)||(48883660-48883753)
[»] chr8 (6 HSPs)
chr8 (121-214)||(15348724-15348817)
chr8 (50-102)||(4031938-4031990)
chr8 (46-97)||(12200304-12200355)
chr8 (46-97)||(12444732-12444783)
chr8 (52-102)||(15348848-15348898)
chr8 (123-163)||(4032032-4032072)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 48870499 - 48870404
Alignment:
119 acacaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaaccttt 214  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||||| |||||||| |||||||||||||||||    
48870499 acacaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaaccttt 48870404  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 48886185 - 48886090
Alignment:
119 acacaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaaccttt 214  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||||| |||||||| |||||||||||||||||    
48886185 acacaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaaccttt 48886090  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 48875797 - 48875708
Alignment:
125 aggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaaccttt 214  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||||||| |||||| ||||| || ||||||||    
48875797 aggtatttgtttgtgaaatccggtggatggattccataggtagaggcttgaaaaacaatgcaacagtataaagcctctgcaagaaccttt 48875708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 50250910 - 50251003
Alignment:
121 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaaccttt 214  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||||||||||||  | | || || |||||||| |||||||||||||||||    
50250910 acaaaggtatttgtatgtgaagcccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaaccttt 50251003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 46 - 165
Target Start/End: Complemental strand, 48898752 - 48898630
Alignment:
46 acaatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaatgtttatatgaat---tggaacacaaaggtatttgtttgtgaac 142  Q
    ||||| ||||||| ||||||||||||||| | || |||||||||||||||||||||| |  | |  |||   | | | |||||||||||||||||||| |    
48898752 acaataaaaccactaagtaatcatctgttaactgatcatacccaaaaccatagaaatataaagaaaaatgattaggagacaaaggtatttgtttgtgagc 48898653  T
143 tccggtggatggattccataggt 165  Q
    |||||||||||||||||||||||    
48898652 tccggtggatggattccataggt 48898630  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 45372191 - 45372282
Alignment:
123 aaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaaccttt 214  Q
    |||||||||||||| ||||| || ||||||||||||||||| |||| | |||||  |  |||||| ||||||||||||||||||||||||||    
45372191 aaaggtatttgtttctgaacaccagtggatggattccatagatagaaggttgaattaccatgcaaaaatataaaccctctacatgaaccttt 45372282  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 48170700 - 48170789
Alignment:
121 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaac 210  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||  ||||||  |  |||||| |||||||| |||||||| ||||    
48170700 acaaaggtatttgtttatgaactcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctctacaggaac 48170789  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 48147752 - 48147802
Alignment:
48 aatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatag 98  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||    
48147752 aatgaaaccaccaagtaatcatctgttaactggtcatacccaaaaccatag 48147802  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 48735419 - 48735469
Alignment:
50 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaa 100  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||    
48735419 tgaaaccaccaagtaatcatctgttaaatggtcatacccaaaaccatagaa 48735469  T

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Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 48852618 - 48852576
Alignment:
121 acaaaggtatttgtttgtgaactccggtggatggattccatag 163  Q
    |||||||||||||||||||||||||||||||||||||||||||    
48852618 acaaaggtatttgtttgtgaactccggtggatggattccatag 48852576  T

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Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 48705479 - 48705571
Alignment:
121 acaaaggtatttgtttgtgaactccggtggatggattccataggt--agaggcttgaagcagaatgcaacaatataaaccctctacatgaacc 211  Q
    ||||||||||||||||||||| ||| || ||||||||||| ||||  ||||| |||||||| |||| ||||||||||| ||||| ||| ||||    
48705479 acaaaggtatttgtttgtgaaatccagtagatggattccacaggtagagagggttgaagcacaatgaaacaatataaaacctctgcattaacc 48705571  T

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Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 49044316 - 49044405
Alignment:
121 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaac 210  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||     ||| ||||  |||||| ||||||||||||||||||||||    
49044316 acaaaggtatttgtttgtgaactctagtggatggattccatagataagttgttgcagcacgatgcaaaaatataaaccctctacatgaac 49044405  T

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Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 48863181 - 48863126
Alignment:
124 aaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagca 179  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| | ||||||||    
48863181 aaggtatttgtttctgagctccggtggatggattccataggtagatgtttgaagca 48863126  T

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Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 50250818 - 50250865
Alignment:
50 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||    
50250818 tgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 50250865  T

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Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 7877777 - 7877727
Alignment:
46 acaatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccat 96  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||||||||    
7877777 acaatgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccat 7877727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 49041201 - 49041320
Alignment:
50 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaatgt---ttat-atgaattggaacacaaaggtatttgtttgtgaactcc 145  Q
    |||||||| ||||||||||||||||||  | |||||||||||||||||||||| |   | || ||| ||| | |  |||||||||| |||||||| ||||    
49041201 tgaaaccatcaagtaatcatctgttgacggatcatacccaaaaccatagaaatttaagtaatcatg-attaggaggcaaaggtattagtttgtgagctcc 49041299  T
146 ggtggatggattccataggta 166  Q
    ||||||||| |||||||||||    
49041300 ggtggatgggttccataggta 49041320  T

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Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 37827114 - 37827207
Alignment:
121 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaaccttt 214  Q
    |||| |||||||||||||||| ||| |||||||||||||||| ||||| | || ||| |   ||||| |||| ||||||||||| |||||||||    
37827114 acaagggtatttgtttgtgaaatccagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacctgaaccttt 37827207  T

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Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 48891367 - 48891274
Alignment:
121 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaaccttt 214  Q
    ||||||||||||||||||||| ||| ||||||||||||||||  |||| | ||||   || |||||| | || |||||||||||||||| ||||    
48891367 acaaaggtatttgtttgtgaagtccagtggatggattccatacatagatgtttgagttagtatgcaaaagtacaaaccctctacatgaagcttt 48891274  T

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Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 7908373 - 7908325
Alignment:
46 acaatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaacc 94  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||||||    
7908373 acaatgaaaccaccaagtaatcatctcttgactggtcataaccaaaacc 7908325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 45384905 - 45384957
Alignment:
50 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 102  Q
    |||||||||||| ||||||| |||||| || ||||||||||||||||||||||    
45384905 tgaaaccaccaaataatcatttgttgactgatcatacccaaaaccatagaaat 45384957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 48902972 - 48902924
Alignment:
54 accaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 102  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| ||||    
48902972 accatcaagtaatcatctcttgagtggtcatacccaaaaccataaaaat 48902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 33133934 - 33133989
Alignment:
121 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaa 176  Q
    |||||||||||||||| ||||||| |||| ||||||||||||||| || |||||||    
33133934 acaaaggtatttgtttatgaactcgggtgaatggattccataggtggaagcttgaa 33133989  T

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Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 50672451 - 50672412
Alignment:
123 aaaggtatttgtttgtgaactccggtggatggattccata 162  Q
    ||||||||||||||||||||||| ||||||||||||||||    
50672451 aaaggtatttgtttgtgaactcctgtggatggattccata 50672412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 47207847 - 47207762
Alignment:
125 aggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaac 210  Q
    |||||||||| | | |||||| |||||||||||||||||||||  |||||||     |||||| |||||||| |||||||||||||    
47207847 aggtatttgtctctcaactccagtggatggattccataggtagtagcttgaaagtcgatgcaaaaatataaagcctctacatgaac 47207762  T

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Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 48705396 - 48705448
Alignment:
50 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 102  Q
    |||||| |||||||||||||||||||| || ||||| |||||||||| |||||    
48705396 tgaaacaaccaagtaatcatctgttgactgatcatatccaaaaccatggaaat 48705448  T

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Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 49048613 - 49048657
Alignment:
53 aaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||    
49048613 aaccaccaaataatcatctgttgatgggtcatacccaaaaccata 49048657  T

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Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 50669112 - 50669052
Alignment:
37 gatcattgcacaatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    |||||| | |||||||||| ||||||||||||||| ||||  ||||||| |||||||||||    
50669112 gatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccata 50669052  T

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Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 7237763 - 7237806
Alignment:
53 aaccaccaagtaatcatctgttgagtggtcatacccaaaaccat 96  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||    
7237763 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

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Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 7771439 - 7771396
Alignment:
53 aaccaccaagtaatcatctgttgagtggtcatacccaaaaccat 96  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||    
7771439 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

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Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 7790124 - 7790081
Alignment:
53 aaccaccaagtaatcatctgttgagtggtcatacccaaaaccat 96  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||    
7790124 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 50669007 - 50668916
Alignment:
121 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacct 212  Q
    |||| ||||| ||||| |||| || ||||||||||||||||| | ||| | | |||| | ||||||| |||||||| |||||||| ||||||    
50669007 acaatggtatctgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaacct 50668916  T

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Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 48852708 - 48852663
Alignment:
52 aaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    |||| |||||||||||||| |||||  |||||||||||||||||||    
48852708 aaactaccaagtaatcatcggttgacgggtcatacccaaaaccata 48852663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 48870584 - 48870539
Alignment:
52 aaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    ||||||| ||||||||||||||| | || |||||||||||||||||    
48870584 aaaccactaagtaatcatctgttaactgatcatacccaaaaccata 48870539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 48875888 - 48875843
Alignment:
52 aaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    ||||||||||||||||||||| | | || |||||||||||||||||    
48875888 aaaccaccaagtaatcatctgctaactgatcatacccaaaaccata 48875843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 48886270 - 48886225
Alignment:
52 aaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    ||||||| ||||||||||||||| | || |||||||||||||||||    
48886270 aaaccactaagtaatcatctgttaactgatcatacccaaaaccata 48886225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 49048704 - 49048749
Alignment:
121 acaaaggtatttgtttgtgaactccggtggatggattccataggta 166  Q
    |||||||||||||| |||||||||  |||||||||||||| |||||    
49048704 acaaaggtatttgtctgtgaactctagtggatggattccaaaggta 49048749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 45366243 - 45366295
Alignment:
50 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 102  Q
    |||||| ||||| |||||||||||| |  ||||||||| ||||||||||||||    
45366243 tgaaacaaccaaataatcatctgttaatgggtcataccaaaaaccatagaaat 45366295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 48863290 - 48863214
Alignment:
18 tcatctgagtttggaattcgatcattgcacaatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaacc 94  Q
    ||||||||||||||||| | |||||   | | ||||||||||||||||||||||  |||  | ||||||||||||||    
48863290 tcatctgagtttggaatactatcatacgatactgaaaccaccaagtaatcatcttctgacggatcatacccaaaacc 48863214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 51 - 213
Target Start/End: Complemental strand, 24367190 - 24367025
Alignment:
51 gaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaatgtttatatgaat---tggaacacaaaggtatttgtttgtgaactccgg 147  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||| |  |||| |||   |   |  |||||||| |||  | ||||||| ||    
24367190 gaaaccaccaagtaatcatctgttgacttgtcatacccaaaaccatagaaatctgcatataaatgattaagaggcaaaggtaattgcctatgaactctgg 24367091  T
148 tggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacctt 213  Q
    ||||||| ||||||||||| | | |||||| ||| ||||||||||||||||||| |||||||||||    
24367090 tggatgggttccataggtaaatgtttgaagaagagtgcaacaatataaaccctcgacatgaacctt 24367025  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 24310135 - 24310047
Alignment:
124 aaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaacct 212  Q
    ||||||||||| | ||||||||||||||||||||||||| ||| | | |||||  | | | |||||||||||| |||||||||||||||    
24310135 aaggtatttgtctatgaactccggtggatggattccatacgtaaatgtttgaaaaacactccaacaatataaaacctctacatgaacct 24310047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 24340452 - 24340405
Alignment:
50 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    |||||||||||||||||||| |||||| | ||||||||||||||||||    
24340452 tgaaaccaccaagtaatcatatgttgattcgtcatacccaaaaccata 24340405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 24352817 - 24352770
Alignment:
50 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    |||||||||||||||||||| |||||| | ||||||||||||||||||    
24352817 tgaaaccaccaagtaatcatatgttgattcgtcatacccaaaaccata 24352770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 24310250 - 24310163
Alignment:
15 acatcatctgagtttggaattcgatcattgcacaatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 102  Q
    ||||||| ||||| |||||| | ||||| | | | | |||| ||||||||||||||| |||| | |||||| ||||||||||||||||    
24310250 acatcatgtgagtatggaatacaatcataggatactaaaactaccaagtaatcatctcttgactcgtcataaccaaaaccatagaaat 24310163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 24369524 - 24369477
Alignment:
50 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    ||||||||||| ||||||||||||||| | |||||| |||||||||||    
24369524 tgaaaccaccaggtaatcatctgttgactcgtcatagccaaaaccata 24369477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 42562342 - 42562544
Alignment:
15 acatcatctgagtttggaattcgatcattgcacaatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaatgtt---tata-t 110  Q
    ||||||||||||| ||||||| |||||  | | | ||||||||| || ||||||| ||||||||| ||||||||||||||||| ||||      |||| |    
42562342 acatcatctgagtatggaatttgatcacgggaaattgaaaccactaaataatcatttgttgagtgatcatacccaaaaccatataaattaaaaatataat 42562441  T
111 gaattggaacacaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaac 210  Q
     ||| |||  ||||||||||||||||||||  |||| ||||||||||||||||||||| || || | || ||||||| | ||||||||||||||| ||||    
42562442 caataggag-acaaaggtatttgtttgtgatgtccgatggatggattccataggtagaagcatgcaccacaatgcaaaagtataaaccctctacacgaac 42562540  T
211 cttt 214  Q
    ||||    
42562541 cttt 42562544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 29696250 - 29696198
Alignment:
50 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 102  Q
    ||||| ||||||||||||||||||||| | |||||||||||||||||||||||    
29696250 tgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccatagaaat 29696198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 29688061 - 29688011
Alignment:
126 ggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaa 176  Q
    ||||||||| |||||||||||||||||||||||||||| || |||||||||    
29688061 ggtatttgtctgtgaactccggtggatggattccatagataaaggcttgaa 29688011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 179074 - 179026
Alignment:
54 accaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 102  Q
    |||| |||||||||||||||||| |  ||||||||||||||||||||||    
179074 accaacaagtaatcatctgttgactcctcatacccaaaaccatagaaat 179026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 29696165 - 29696113
Alignment:
123 aaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttga 175  Q
    ||||||||| ||||||||| ||||||||||||||||||||   ||||||||||    
29696165 aaaggtattcgtttgtgaaatccggtggatggattccatatacagaggcttga 29696113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 29712599 - 29712679
Alignment:
134 tttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaaccttt 214  Q
    |||||||||||| |||||||||||||||||  |||| | |||| || ||  ||| | ||||||||||||||| ||||||||    
29712599 tttgtgaactccagtggatggattccatagacagagacatgaaccacaactcaaaagtataaaccctctacacgaaccttt 29712679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 29261201 - 29261158
Alignment:
125 aggtatttgtttgtgaactccggtggatggattccataggtaga 168  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||    
29261201 aggtatttgtttgtggactccggttgatggattccatagataga 29261158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 21015761 - 21015672
Alignment:
121 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaac 210  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| | ||||| ||   ||||| ||||||||||||||||||||||    
21015761 acaaaggtatttgtttgtgaactctagtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaac 21015672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 21979770 - 21979863
Alignment:
121 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaaccttt 214  Q
    |||||||||||||||| |||| ||| || || || ||||||| |||||| ||||||  | | || || |||||||| |||||||||||||||||    
21979770 acaaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttgaaaaacagtggaaaaatataaatcctctacatgaaccttt 21979863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 21015849 - 21015806
Alignment:
54 accaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    |||||||| ||||||||||||||  |||||||||||||||||||    
21015849 accaccaaataatcatctgttgatgggtcatacccaaaaccata 21015806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 21979678 - 21979722
Alignment:
53 aaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    ||||||||||||||||| | |||| |||||||| |||||||||||    
21979678 aaccaccaagtaatcatttcttgactggtcataaccaaaaccata 21979722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 47452028 - 47452120
Alignment:
122 caaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaaccttt 214  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||| | |||||| | ||   || | ||||||||||||||||||||||||    
47452028 caaaggtatttgtttgtgaactccagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaaccttt 47452120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 11005994 - 11006037
Alignment:
54 accaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
11005994 accaccaagtaatcatctcttgaatggtcatacccaaaaccata 11006037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 11015641 - 11015728
Alignment:
123 aaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaac 210  Q
    ||||||||||||||||||  ||| || ||||||||||||||||||| | |||||| | ||  ||| | |||||| |||||||||||||    
11015641 aaaggtatttgtttgtgatgtccagttgatggattccataggtagatgtttgaagaacaagtcaaaactataaatcctctacatgaac 11015728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 11024569 - 11024612
Alignment:
54 accaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
11024569 accaccaagtaatcatctcttgaatggtcatacccaaaaccata 11024612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 11015557 - 11015600
Alignment:
54 accaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    |||||||||||||||||| || | ||||||||||||||||||||    
11015557 accaccaagtaatcatctcttaaatggtcatacccaaaaccata 11015600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 30120435 - 30120478
Alignment:
125 aggtatttgtttgtgaactccggtggatggattccataggtaga 168  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||    
30120435 aggtatttgtttgtggactccggtggatggattccatagataga 30120478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 48883753 - 48883660
Alignment:
121 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaaccttt 214  Q
    ||||||||||||||||||||| ||| ||| |||||||||||| | ||| | | |||| |  |||||| || | |||||||||||| ||||||||    
48883753 acaaaggtatttgtttgtgaaatccagtgtatggattccatatgcagatgttggaagaaccatgcaaaaacagaaaccctctacacgaaccttt 48883660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 15348817 - 15348724
Alignment:
121 acaaaggtatttgtttgtgaactccggtggatggattccataggtagaggcttgaagcagaatgcaacaatataaaccctctacatgaaccttt 214  Q
    ||||||||| || | |||||| ||||||||||||||||||||| |||||| |||||  | | | ||| | || ||| |||||||||||||||||    
15348817 acaaaggtacttttctgtgaaatccggtggatggattccatagatagaggattgaataatagttcaaaagtacaaagcctctacatgaaccttt 15348724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 4031938 - 4031990
Alignment:
50 tgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 102  Q
    ||||||||||| ||| |||| |||||| |||||||||||||||||||| ||||    
4031938 tgaaaccaccaggtagtcatttgttgactggtcatacccaaaaccatataaat 4031990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 12200355 - 12200304
Alignment:
46 acaatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    ||||| |||||||||||||||||||| ||||  ||||||| |||||||||||    
12200355 acaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 12200304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 12444783 - 12444732
Alignment:
46 acaatgaaaccaccaagtaatcatctgttgagtggtcatacccaaaaccata 97  Q
    ||||| |||||||||||||||||||| ||||  ||||||| |||||||||||    
12444783 acaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 12444732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 15348898 - 15348848
Alignment:
52 aaaccaccaagtaatcatctgttgagtggtcatacccaaaaccatagaaat 102  Q
    |||||||||||||||||||| || | ||||||||||| |||| ||||||||    
15348898 aaaccaccaagtaatcatcttttaattggtcatacccgaaactatagaaat 15348848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 4032032 - 4032072
Alignment:
123 aaaggtatttgtttgtgaactccggtggatggattccatag 163  Q
    |||||||||||||||||||||||  |||||| |||||||||    
4032032 aaaggtatttgtttgtgaactccaatggatgaattccatag 4032072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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