View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17203_low_129 (Length: 210)
Name: NF17203_low_129
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_129 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 30540490 - 30540675
Alignment:
| Q |
13 |
gaaatgaagaatttagtggnnnnnnntatgatattaatgagtcaaagccataaagctcctgcttgtttaagaatggggaccaattcaccagaaatatgag |
112 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30540490 |
gaaatgaaaaatttagtggaaaaaaatatgatattaatgagtcaaagccataaagctcctgcttgtttaagaatggggaccaattcaccagaaatatgag |
30540589 |
T |
|
| Q |
113 |
tggccataattcgatccaatcctccaaacaaatttccacctataaacactgctggaaattgaaccttctcttcatttgaaattgat |
198 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30540590 |
tggccataattcgatccagtcctccaaacaaatttccacctataaacactgctggaaattgaaccttctcttcatttgcaattgat |
30540675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 38910041 - 38910144
Alignment:
| Q |
58 |
agccataaagctcctgcttgtttaagaatggggaccaattcaccagaaatatgagtggccataattcgatccaatcctccaaacaaatttccacctataa |
157 |
Q |
| |
|
|||||||||||||| ||||||||||| | || ||||||||||||||||||||||| ||||| | ||||||||||| |||||||| || |||||||||| |
|
|
| T |
38910041 |
agccataaagctccagcttgtttaagcaatggaaccaattcaccagaaatatgagtagccatgagacgatccaatccaccaaacaacttaccacctataa |
38910140 |
T |
|
| Q |
158 |
acac |
161 |
Q |
| |
|
|||| |
|
|
| T |
38910141 |
acac |
38910144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University