View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_13 (Length: 615)
Name: NF17203_low_13
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 192 - 611
Target Start/End: Original strand, 32183424 - 32183841
Alignment:
| Q |
192 |
aactatgtttgatttgctaattggttgagctccatacgtgggaagaaagaacgagaaaaacatatagacaacatcattattatttcgattattaagccaa |
291 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32183424 |
aactatgtttgacttgctaattggttgagctccatacgtgggaagaaagaacgagaaaaacata--gacaacatcattattatttcgattattaagccaa |
32183521 |
T |
|
| Q |
292 |
taattccataagaaacatacatatttcctagaatcctagatagtaaaagagaacaacctcaaacattaattgttgacattgtttttccactttcgaataa |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183522 |
taattccataagaaacatacatatttcctagaatcctagatactaaaagagaacaacctcaaacattaattgttgacattgtttttccactttcgaataa |
32183621 |
T |
|
| Q |
392 |
gcttctgaatagtaacctcacaatccccaccaatgctaatagccctcaatcccccatctttaagctctattgctttaactttaaacaattcattcttgat |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32183622 |
gcttctgaatagtaacctcacaatccccaccaatgctaatagccctcaatcccccatctttaagctctattgctttaactttaaacaattcattcttcat |
32183721 |
T |
|
| Q |
492 |
catctcttttatagcatctccaatttcttctcctttcacaacacgttcaccaccccaaccccaactcttgttccaaatcccccatccactaatctcaacc |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32183722 |
catctcttttatagcatctccaatttcttctcctttcacaacacgttcaccaccccaaccccaattcttgttccaaatcccccatccactaatctcaacc |
32183821 |
T |
|
| Q |
592 |
aaccctgcatttatcctttg |
611 |
Q |
| |
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|||||||||||||||||||| |
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| T |
32183822 |
aaccctgcatttatcctttg |
32183841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 32182820 - 32182975
Alignment:
| Q |
29 |
ttacattgattagttctttctcaaaagttttgagaatcacataatcttgaataaaaacatgacttcaacttacaagcaagataaactataactataaaga |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32182820 |
ttacattgattagttctttctcaaaagttttgagaatcacataatcttgaataaaaacatgacttcaacttacaagcaagataaactataaccataaaga |
32182919 |
T |
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| Q |
129 |
acactacaattgttgatccatctttaactaaatatggatagattagtacctatttt |
184 |
Q |
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| T |
32182920 |
acactacaattgtttatccatctttaactaaatatggatagattagtacctatttt |
32182975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 360 - 606
Target Start/End: Original strand, 32176422 - 32176669
Alignment:
| Q |
360 |
attgttgacattgtttttccactttcgaataagcttctgaatagtaacctcacaatccccaccaatgctaatagccctcaatcccccatctttaagctct |
459 |
Q |
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|||||||||||| |||||||||||| |||| ||||||||||| |||||||||||||| ||||||| || |||||| || ||| | |||||||||||| |
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| T |
32176422 |
attgttgacattatttttccacttttgaattagcttctgaatggtaacctcacaatctccaccaacacttatagccttccttccttcctctttaagctct |
32176521 |
T |
|
| Q |
460 |
attgctttaactttaaacaattcattcttgatcatctcttttatagcatctccaatttcttctcctttcacaacacgttcaccaccccaaccccaactct |
559 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||| |
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| T |
32176522 |
attgctttaactttaaacaattcattcttcatcatctcttttatagcatctccaatttcaccccctttcacaacaagttcaccaccccaaccccaactct |
32176621 |
T |
|
| Q |
560 |
tgttcca-aatcccccatccactaatctcaaccaaccctgcatttatc |
606 |
Q |
| |
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||||||| | |||||||||||||||||| |||||| |||||||||| |
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|
| T |
32176622 |
tgttccaccaccccccatccactaatctccaccaactttgcatttatc |
32176669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 199 - 338
Target Start/End: Original strand, 48285207 - 48285344
Alignment:
| Q |
199 |
tttgatttgctaattggttgagctccatacgtgggaagaaagaacgagaaaaacatatagacaacatcattattatttcgattattaagccaataattcc |
298 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
48285207 |
tttgacttgctaattggttgagctccatatgtgggaagaaagaacgagaaaaacatataggtaacatcattattctttcgattattaagccaataattcc |
48285306 |
T |
|
| Q |
299 |
ataagaaacatacatatttcctagaatcctagatagtaaa |
338 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
48285307 |
ataagaaacat--atatttcctagaatcctagatactaaa |
48285344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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