View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_14 (Length: 595)
Name: NF17203_low_14
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 17 - 590
Target Start/End: Original strand, 591931 - 592504
Alignment:
| Q |
17 |
aagatatgctccggtccaagtggaggtgattgaactggtgtgctgtcctgcgaaaagagcggcaatgaggagtcctgtgacttcagattctgttgttggg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591931 |
aagatatgctccggtccaagtggaggtgattgaactggtgtgctgtcctgcgaaaagagcggcaatgaggagtcctgtgacttcagattctgttgttggg |
592030 |
T |
|
| Q |
117 |
cgaccgtctttgtattttgagtcaatgaagcactgcagcatgtcttcctctgatttgtcggcactttttcgtgaaaatatgatgtttgcaaatatttcag |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
592031 |
cgaccgtctttgtattttgagtcaatgaagcactgcagcatgtcgttctctgatttgtcggcactttttcgtgaagatatgatgtttgcaaatatttcag |
592130 |
T |
|
| Q |
217 |
caagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggcatgggaagagaacactgattggaagcattccgttatcgagatcgtggaa |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
592131 |
caagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggcatgggaagagaacactgattggaagcattccattatcgagatcgtggaa |
592230 |
T |
|
| Q |
317 |
caatgcagagacatcatcgaagagcttgtcacgaacttcatgacccaaaaggcatctactggttgtcaagatgatcagatgctcaagctcatacttcaaa |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
592231 |
caatgcagagacatcatcgaagagcttgtcacgaacttcacgacccaaaaggcatctactggctgtcaagatgatcagatgctcaagctcatacttcaaa |
592330 |
T |
|
| Q |
417 |
tcaacttcaccgcttgatccccactttgagaaatagtcctgtaaatttggttcatgtttcagaaaacaacacagccnnnnnnngttgcaagagaggaatt |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |
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| T |
592331 |
tcaacttcaccgcttgatccccactttgagaaatagtcctgtaaatttggttcatgtttgagaaaacaacacagccaaagaaagctgcaagagaggaatt |
592430 |
T |
|
| Q |
517 |
tacaattatcaacataaagtaaccaacaatcaagtctcagaagtttgataccattattataccatgatgatgtc |
590 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
592431 |
tacaattatcaacataaagtaacaaacaatcaagtctcagaagtttgataccattattataccatgatcatgtc |
592504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 17 - 582
Target Start/End: Complemental strand, 580496 - 579932
Alignment:
| Q |
17 |
aagatatgctccggtccaagtggaggtgattgaactggtgtgctgtcctgcgaaaagagcggcaatgaggagtcctgtgacttcagattctgttgttggg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580496 |
aagatatgctccggtccaagtggaggtgattgaactggtgtgctgtcctgcgaaaagagcggcaatgaggagtcctgtgacttcagattctgttgttggg |
580397 |
T |
|
| Q |
117 |
cgaccgtctttgtattttgagtcaatgaagcactgcagcatgtcttcctctgatttgtcggcactttttcgtgaaaatatgatgtttgcaaatatttcag |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
580396 |
cgaccgtctttgtattttgagtcaatgaagcactgcagcatgtcgtcctctgatttgtcggcaatttttcgtgaagatatgatgtttgcaaatatttcag |
580297 |
T |
|
| Q |
217 |
caagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggcatgggaagagaacactgattggaagcattccgttatcgagatcgtggaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580296 |
caagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggtatgggaagagaacactgattggaagcattccgttatcgagatcgtggaa |
580197 |
T |
|
| Q |
317 |
caatgcagagacatcatcgaagagcttgtcacgaacttcatgacccaaaaggcatctactggttgtcaagatgatcagatgctcaagctcatacttcaaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
580196 |
caatgcagagacatcatcgaagagcttgtcacgaacttcacgacccaagagacatctactggctgtcaagatgatcagatgctcaagctcatacttcaaa |
580097 |
T |
|
| Q |
417 |
tcaacttcaccgcttgatccccactttgagaaatagtcctgtaaatttggttcatgtttcagaaaacaacacagccnnnnnnngttgcaagagaggaatt |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||| |
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|
| T |
580096 |
tcaacttcaccgcttgatccccactttgagaaatagtcctgtaaatttggttcatgtttgag-aaataacacagtgaaagaaagttgcaagagaggaatt |
579998 |
T |
|
| Q |
517 |
tacaattatcaacataaagtaaccaacaatcaagtctcagaagtttgataccattattataccatg |
582 |
Q |
| |
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||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
579997 |
tacaattatcaacataaagaaacaaacaatcaagtctcagaggtttgataccattattataccatg |
579932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 37434232 - 37434150
Alignment:
| Q |
68 |
gaaaagagcggcaatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcact |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||| |
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| T |
37434232 |
gaaaagagcggcaatgaggagtcctgtgacttcagcttcggttgtaaggcggttgtctttgtattttgagtcaatgaagcact |
37434150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 37434262 - 37434230
Alignment:
| Q |
18 |
agatatgctccggtccaagtggaggtgattgaa |
50 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
37434262 |
agatatgctctggtccaagtggaggtgattgaa |
37434230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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