View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_low_15 (Length: 590)

Name: NF17203_low_15
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17203_low_15
NF17203_low_15
[»] chr4 (5 HSPs)
chr4 (1-579)||(51117380-51117958)
chr4 (207-318)||(51117189-51117300)
chr4 (252-307)||(6854231-6854286)
chr4 (254-316)||(14085409-14085471)
chr4 (403-463)||(51117934-51117994)
[»] chr7 (3 HSPs)
chr7 (252-318)||(35041747-35041813)
chr7 (273-309)||(3243753-3243789)
chr7 (253-309)||(20553734-20553790)
[»] chr5 (2 HSPs)
chr5 (252-313)||(28577304-28577365)
chr5 (273-313)||(14373217-14373257)
[»] chr6 (9 HSPs)
chr6 (259-315)||(779877-779933)
chr6 (253-313)||(3113326-3113385)
chr6 (270-313)||(7256191-7256234)
chr6 (251-307)||(12235343-12235399)
chr6 (252-315)||(10337680-10337743)
chr6 (254-313)||(31580285-31580344)
chr6 (259-313)||(3527169-3527223)
chr6 (277-311)||(33833962-33833996)
chr6 (254-315)||(6213112-6213173)
[»] chr1 (3 HSPs)
chr1 (264-311)||(6430738-6430785)
chr1 (255-313)||(21376280-21376338)
chr1 (260-301)||(3881007-3881048)
[»] scaffold0018 (1 HSPs)
scaffold0018 (253-294)||(70110-70151)
[»] chr3 (2 HSPs)
chr3 (271-313)||(26576374-26576416)
chr3 (276-313)||(44722961-44722998)
[»] chr2 (1 HSPs)
chr2 (253-313)||(19525206-19525265)


Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 51117958 - 51117380
Alignment:
Q  1 cattttaatatacttcctttgctattgttagatatcatatagtttaaattggtcgataattgtagaaatagctgcgtcgatatgatgttagagagttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51117958 cattttaatatacttcctttgctattgttagatatcatatagtttaaattggtcggtaattgtagaaatagctgcgtcgatatgatgttagagagttgaa 51117859  T
Q  101 cttgtaacatttttctttttgaaccacattttacagcatggttaacagtatcttacatcgatgctaacatctagtggtgtgtgcctgtttttaagacgaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||| ||||||||    
T  51117858 cttgtaacatttttctttttgaaccacattttacagcatggttaacagtatcttacatcattgctaacatctagtggtgtgtatctgttttgaagacgaa 51117759  T
Q  201 tccctgtttgagtcttgatttattatgatgaatcctgattcactgtgatgagattcacgattcggaaagtaggtcttctgattcacgatttgaatctcga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  51117758 tccctgtttgagtcttgatttattatgatgaatcctgattcactgtgatgagattcacgattcggaaagtaggtcttttgattcacgatttgaatcttga 51117659  T
Q  301 tttgataaccatgttttacacttgtcatctagatatcatggttgtgaccaaaatgaatgaccatagcgtatatcatggttcatgtcttacgatacatgtg 400  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51117658 tttgataaccatgttttacacttgtcatctggatatcatggttgtgaccaaaatgaatgaccatagcgtatatcatggttcatatcttacgatacatgtg 51117559  T
Q  401 agattcccaagttcttctgttttataattccctatattcattttaatatggttcctttgctatcgataggcatcatggagtttatattgccctgtataat 500  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51117558 agattcccaagttcttctgttttataattccttatattcattttaatatggttcctttgctatcgataggcatcatggagtttatattgccctgtataat 51117459  T
Q  501 tgaagaaatatatttttgtatatgatattagatggttgaacatttttcttttcaaaccatattttacagcatggttcat 579  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51117458 tgcagaaatatatttttgtatatgatattagatggttgaacatttttcttttcaaaccatattttacagcatggttcat 51117380  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 207 - 318
Target Start/End: Complemental strand, 51117300 - 51117189
Alignment:
Q  207 tttgagtcttgatttattatgatgaatcctgattcactgtgatgagattcacgattcggaaagtaggtcttctgattcacgatttgaatctcgatttgat 306  Q
    ||||||||||| |||||| ||||||||||  | ||||| ||||||||||||||||| || ||| |||||||   ||||||||||||||||||||||||||    
T  51117300 tttgagtcttggtttattgtgatgaatcccaactcactatgatgagattcacgatttgggaagcaggtctttcaattcacgatttgaatctcgatttgat 51117201  T
Q  307 aaccatgtttta 318  Q
    ||| ||||||||    
T  51117200 aactatgtttta 51117189  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 6854286 - 6854231
Alignment:
Q  252 gattcacgattcggaaagtaggtcttctgattcacgatttgaatctcgatttgata 307  Q
    ||||||||||| | |||||| |||||||||||||||||||||||||||||||||||    
T  6854286 gattcacgatttgaaaagtaagtcttctgattcacgatttgaatctcgatttgata 6854231  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 14085409 - 14085471
Alignment:
Q  254 ttcacgattcggaaagtaggtcttctgattcacgatttgaatctcgatttgataaccatgttt 316  Q
    |||||||||| |||| | ||||||||| || || |||||||| ||||||||||| ||||||||    
T  14085409 ttcacgattcagaaaattggtcttctggtttacaatttgaatatcgatttgatatccatgttt 14085471  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 463
Target Start/End: Complemental strand, 51117994 - 51117934
Alignment:
Q  403 attcccaagttcttctgttttataattccctatattcattttaatatggttcctttgctat 463  Q
    |||| ||||||||| |||||||| ||| | ||| |||||||||||||  ||||||||||||    
T  51117994 attcacaagttcttttgttttatgattacttatgttcattttaatatacttcctttgctat 51117934  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 35041747 - 35041813
Alignment:
Q  252 gattcacgattcggaaagtaggtcttctgattcacgatttgaatctcgatttgataaccatgtttta 318  Q
    |||||| |||||||||   | |||||| |||||| ||||||||||||||||||||||||||||||||    
T  35041747 gattcatgattcggaacaaatgtcttcggattcatgatttgaatctcgatttgataaccatgtttta 35041813  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 3243753 - 3243789
Alignment:
Q  273 gtcttctgattcacgatttgaatctcgatttgataac 309  Q
    |||||||||||||| |||||||||||||||| |||||    
T  3243753 gtcttctgattcaccatttgaatctcgatttaataac 3243789  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 20553790 - 20553734
Alignment:
Q  253 attcacgattcggaaagtaggtcttctgattcacgatttgaatctcgatttgataac 309  Q
    |||||| |||| |||| ||||||||||  |||| ||||||||| |||||||||||||    
T  20553790 attcacaattcagaaaataggtcttctagttcatgatttgaatttcgatttgataac 20553734  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 28577304 - 28577365
Alignment:
Q  252 gattcacgattcggaaagtaggtcttctgattcacgatttgaatctcgatttgataaccatg 313  Q
    ||||||||||||||||| ||||| ||| ||||||| |||||||| | |||||||||||||||    
T  28577304 gattcacgattcggaaaataggtgttccgattcacaatttgaatatagatttgataaccatg 28577365  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 14373217 - 14373257
Alignment:
Q  273 gtcttctgattcacgatttgaatctcgatttgataaccatg 313  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  14373217 gtcttctgattcaggatttgaatctcgatttgatgaccatg 14373257  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 779877 - 779933
Alignment:
Q  259 gattcggaaagtaggtcttctgattcacgatttgaatctcgatttgataaccatgtt 315  Q
    ||||| |||| |||||||||||||||  ||||||||| |||||||||||||||||||    
T  779877 gattcagaaaataggtcttctgattcgtgatttgaatatcgatttgataaccatgtt 779933  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 3113326 - 3113385
Alignment:
Q  253 attcacgattcggaaagtaggtcttctgattcacgatttgaatctcgatttgataaccatg 313  Q
    |||||||||||| |||  |||||||||||||||||||||||||||| |||||||| |||||    
T  3113326 attcacgattcgaaaaa-aggtcttctgattcacgatttgaatctcaatttgatatccatg 3113385  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 7256234 - 7256191
Alignment:
Q  270 taggtcttctgattcacgatttgaatctcgatttgataaccatg 313  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  7256234 taggtcttctgattcgtgatttgaatctcgatttgataaccatg 7256191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 12235399 - 12235343
Alignment:
Q  251 agattcacgattcggaaagtaggtcttctgattcacgatttgaatctcgatttgata 307  Q
    |||||||||||| | ||| ||| | |||||||||||||||||||| |||||||||||    
T  12235399 agattcacgatttgtaaaatagatgttctgattcacgatttgaatttcgatttgata 12235343  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 10337743 - 10337680
Alignment:
Q  252 gattcacgattcggaaagtaggtcttctgattcacgatttgaatctcgatttgataaccatgtt 315  Q
    ||||||||||||  ||| ||||||||||||||||| || ||||| |||||| ||||| ||||||    
T  10337743 gattcacgattcaaaaaataggtcttctgattcacaatctgaatatcgattcgataaacatgtt 10337680  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 31580344 - 31580285
Alignment:
Q  254 ttcacgattcggaaagtaggtcttctgattcacgatttgaatctcgatttgataaccatg 313  Q
    ||||| ||| ||||| || | |||||||||||| ||||||||||| ||||||||||||||    
T  31580344 ttcacaatttggaaaataagccttctgattcacaatttgaatctcaatttgataaccatg 31580285  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 3527169 - 3527223
Alignment:
Q  259 gattcggaaagtaggtcttctgattcacgatttgaatctcgatttgataaccatg 313  Q
    ||||| |||| ||| ||||| |||||| ||||||||| |||||||||||||||||    
T  3527169 gattcagaaaatagatcttcggattcatgatttgaatgtcgatttgataaccatg 3527223  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 311
Target Start/End: Complemental strand, 33833996 - 33833962
Alignment:
Q  277 tctgattcacgatttgaatctcgatttgataacca 311  Q
    ||||||||||||||| |||||||||||||||||||    
T  33833996 tctgattcacgatttcaatctcgatttgataacca 33833962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 6213173 - 6213112
Alignment:
Q  254 ttcacgattcggaaagtaggtcttctgattcacgatttgaatctcgatttgataaccatgtt 315  Q
    ||||||||||| ||| |||||| ||| ||| ||  ||||||||| |||||||||||||||||    
T  6213173 ttcacgattcgaaaaataggtcctctaattaactctttgaatcttgatttgataaccatgtt 6213112  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 264 - 311
Target Start/End: Original strand, 6430738 - 6430785
Alignment:
Q  264 ggaaagtaggtcttctgattcacgatttgaatctcgatttgataacca 311  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  6430738 ggaaaataggtcttttgattcacaatttgaatctcgatttgataacca 6430785  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 21376280 - 21376338
Alignment:
Q  255 tcacgattcggaaagtaggtcttctgattcacgatttgaatctcgatttgataaccatg 313  Q
    ||||||||||||||| | | |||| ||||||| |||| |||||| ||||||||||||||    
T  21376280 tcacgattcggaaagcatggcttccgattcacaatttaaatctcaatttgataaccatg 21376338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 3881007 - 3881048
Alignment:
Q  260 attcggaaagtaggtcttctgattcacgatttgaatctcgat 301  Q
    ||||||||| ||||||||| |||||| |||||||||||||||    
T  3881007 attcggaaaataggtcttccgattcatgatttgaatctcgat 3881048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 70151 - 70110
Alignment:
Q  253 attcacgattcggaaagtaggtcttctgattcacgatttgaa 294  Q
    |||||| |||||||||||||||||||||||||| ||||||||    
T  70151 attcacaattcggaaagtaggtcttctgattcatgatttgaa 70110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 26576416 - 26576374
Alignment:
Q  271 aggtcttctgattcacgatttgaatctcgatttgataaccatg 313  Q
    ||||||| ||||||||||||||||||| ||||| |||||||||    
T  26576416 aggtcttttgattcacgatttgaatctagatttaataaccatg 26576374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 44722961 - 44722998
Alignment:
Q  276 ttctgattcacgatttgaatctcgatttgataaccatg 313  Q
    |||||||| | |||||||||||||||||||||||||||    
T  44722961 ttctgatttaagatttgaatctcgatttgataaccatg 44722998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 19525265 - 19525206
Alignment:
Q  253 attcacgattcggaaagtaggtcttctgattcacgatttgaatctcgatttgataaccatg 313  Q
    ||||| |||||| ||| |||||||| |||| ||| ||||||||||| ||||||||||||||    
T  19525265 attcatgattcgaaaaataggtctt-tgatgcacaatttgaatctcaatttgataaccatg 19525206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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