View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_16 (Length: 574)
Name: NF17203_low_16
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 56485840 - 56485568
Alignment:
| Q |
9 |
gaagaaaatgaacatgaacacggccacgacaactcttctgctgctgctgttgccataaaggtacgtacatgggtacatgtgactgtctaggatcgatcca |
108 |
Q |
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| T |
56485840 |
gaagaaaatgaacatgaacacggccacgacaactcttctgctgctgctgttgccataaaggtacgtacatgggtacatgtgactgtctaggatcgatcca |
56485741 |
T |
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| Q |
109 |
tgatgattttattaagtcactcactgcctttgttttttatttggatcaaggttgttgttgacccagggaaacctccacaacttacatggcagcgcaaatt |
208 |
Q |
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| T |
56485740 |
tgatgattttattaagtcactcactgcctttgttttttatttggattaaggttgttgttgacccagggaaacctccacaacttacatggcagcgcaaatt |
56485641 |
T |
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| Q |
209 |
aaacaatcatgcaaatgcaaatgttccatcagaattcaccttatctttcaaagagatgattcatcttgtacgt |
281 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56485640 |
aaacaatcatgcaaattcaaatgttccatcagaattcaccttatctttcaaagagatgattcatcttgtacgt |
56485568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 341 - 558
Target Start/End: Complemental strand, 56485508 - 56485291
Alignment:
| Q |
341 |
tatataggctcccattggttatcgtctatggcgccatgttcgtgaagaagctgccaaaggaagggtacttaatcttataccttcttttcatctctatata |
440 |
Q |
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| T |
56485508 |
tatataggctcccattggttatcgtctatggcgccatgttcgtgaagaagcttccaaaggaagggtacttaatcttataccttcttttcatctctatata |
56485409 |
T |
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| Q |
441 |
tcttatgatatctaaccattattctttttgcttttctttctcagattggaatgattgatccttttgctaagcgtcatgtaacttcttctcatggcgttcc |
540 |
Q |
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| T |
56485408 |
tcttatgatatctaaccattattctttttgcttttctttctcagattggaatgattgatccttttgctaagcgtcatgtaacttcttctcatggcgttcc |
56485309 |
T |
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| Q |
541 |
tttaggtggtgttgggtg |
558 |
Q |
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|||||||||||||||||| |
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| T |
56485308 |
tttaggtggtgttgggtg |
56485291 |
T |
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