View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_17 (Length: 570)
Name: NF17203_low_17
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 6917633 - 6917921
Alignment:
| Q |
11 |
cacagacttattattcaataataatattgatcacaaacactcagtttccactaagagatggtgcagggccaagtgataagtaatttttgcactatttgat |
110 |
Q |
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| T |
6917633 |
cacagacttattattcaataataatattgatcacaaacactcagtttccactaagagatggtgcagggccaagtgataagtaatttttgcactatttgat |
6917732 |
T |
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| Q |
111 |
gactgttcttggcacacatgcatgctgtttccacgcctgtgttatggttggttgagaggctatgatgttaacataatttgtccactggtgttgaaaagtc |
210 |
Q |
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| T |
6917733 |
gactgttcttggcacatatgcatgatgtttccacgcctgtgttatggttggttgagaggctatgatgttaacataatttgtccactggtgttgaaaagtc |
6917832 |
T |
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| Q |
211 |
aaatggcttatgtcatgagaacaacaaggttacatggtcgtttccaagatcaatggtaaaggttaaaaacttgaagtaatggtaatttg |
299 |
Q |
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| T |
6917833 |
aaatggcttatgtcatgagaacaacaaggttacatggtcatttccaagatcaacggtaaaggttaaaaacttgaagtaatggtaatttg |
6917921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 327 - 552
Target Start/End: Complemental strand, 34821448 - 34821222
Alignment:
| Q |
327 |
aataagaagatccgtaatggcgtgaggattatatggcatgtcgcgatttggaacatttggaaagcgaggaatgattttatatttaacaatgctgtcatac |
426 |
Q |
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||||| ||||| ||||| || |||||| |||| ||||| | ||||||||||| ||| |||||||||||||||||| |||| |||||||||||||| || |
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| T |
34821448 |
aataaaaagattcgtaagggagtgaggcttatttggcacgccgcgatttggagcatatggaaagcgaggaatgatattatttttaacaatgctgttttag |
34821349 |
T |
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| Q |
427 |
atactgaagagttgttagaatcaattaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaa |
526 |
Q |
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| T |
34821348 |
attttgaggcactgttggaatcaataaaggttttgtggtggaggtggtgtttaggtcgattggatgtgccgtcttgtttgttttacgaatggagctggaa |
34821249 |
T |
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| Q |
527 |
tccgaagga-ttgtttgatgcggtgat |
552 |
Q |
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| T |
34821248 |
tccaaaggatttgtttgatgcggtgat |
34821222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 453 - 551
Target Start/End: Original strand, 53562335 - 53562433
Alignment:
| Q |
453 |
aaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtga |
551 |
Q |
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| T |
53562335 |
aaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggaagtggaatcccaaggactgtttgatgcggtga |
53562433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 299 - 552
Target Start/End: Complemental strand, 38185520 - 38185267
Alignment:
| Q |
299 |
gtgggaatgttggaatgacgcggcatctaataagaagatccgtaatggcgtgaggattatatggcatgtcgcgatttggaacatttggaaagcgaggaat |
398 |
Q |
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| T |
38185520 |
gtgggaatgttggaattgagcggtttataataaaaagatttgtaagggagtgaggcttatttggcatgccgccatttggagcatatggaaagctaggaat |
38185421 |
T |
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| Q |
399 |
gattttatatttaacaatgctgtcatacatactgaagagttgttagaatcaattaaggttttatcttggaggtggtgtttggggagattgaattcgccgg |
498 |
Q |
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| T |
38185420 |
gatataacttttaataatgcagtgttggattgtgaggcattgctggaatctattaaggtgttggcctggaggtggtgttttggtagaataaacttgccgg |
38185321 |
T |
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| Q |
499 |
cgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtgat |
552 |
Q |
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| T |
38185320 |
catgtttgttttacgagtggaattggaatccgaaggaatgcttgttgcggtgat |
38185267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 451 - 552
Target Start/End: Complemental strand, 22153664 - 22153563
Alignment:
| Q |
451 |
ttaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtg |
550 |
Q |
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||||||| || ||||||||||| | |||||| || |||||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||| ||||||| |
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| T |
22153664 |
ttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtg |
22153565 |
T |
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| Q |
551 |
at |
552 |
Q |
| |
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|| |
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| T |
22153564 |
at |
22153563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 451 - 552
Target Start/End: Complemental strand, 22209579 - 22209478
Alignment:
| Q |
451 |
ttaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtg |
550 |
Q |
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||||||| || ||||||||||| | |||||| || |||||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||| ||||||| |
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| T |
22209579 |
ttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtg |
22209480 |
T |
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| Q |
551 |
at |
552 |
Q |
| |
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|| |
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| T |
22209479 |
at |
22209478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 444 - 539
Target Start/End: Original strand, 1557362 - 1557457
Alignment:
| Q |
444 |
gaatcaattaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgt |
539 |
Q |
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|||||||||||||| || || ||||||||||||||||| ||||||| | ||| || || ||||||||||| |||| ||||||||||||| ||||| |
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| T |
1557362 |
gaatcaattaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaatccgaagaattgt |
1557457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 451 - 552
Target Start/End: Original strand, 4903893 - 4903994
Alignment:
| Q |
451 |
ttaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtg |
550 |
Q |
| |
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||||||| || |||||||| |||| |||||| || ||||||||| |||| |||||||| ||||||| |||||||| ||||||||||||| ||||||| |
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| T |
4903893 |
ttaaggtgttgtcttggagatggtttttgggtaggttgaattcgtacgcgtttttgttttatgagtggaattggaatctgaaggattgtttgttgcggtg |
4903992 |
T |
|
| Q |
551 |
at |
552 |
Q |
| |
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|| |
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| T |
4903993 |
at |
4903994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 400
Target Start/End: Original strand, 1557245 - 1557318
Alignment:
| Q |
327 |
aataagaagatccgtaatggcgtgaggattatatggcatgtcgcgatttggaacatttggaaagcgaggaatga |
400 |
Q |
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||||| ||||| || || || |||||| |||| ||||||| | | |||||||||||||||||||| |||||||| |
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| T |
1557245 |
aataaaaagattcggaagggtgtgaggcttatttggcatgccaccatttggaacatttggaaagcaaggaatga |
1557318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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