View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_18 (Length: 569)
Name: NF17203_low_18
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 19 - 564
Target Start/End: Original strand, 10373 - 10927
Alignment:
| Q |
19 |
aaattctccttacaaacttaagctccaatctcttccttgtcccttgcttctaaacacccaaaatgcaatacaaaagcttcaatcttcacacatgcaatca |
118 |
Q |
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| T |
10373 |
aaattcttcttacaaacttaagctccaatctcttccttgtcccttgcttctaaacacccaaaatgcaatacaaaagcttcaatcttcacacatgcaatca |
10472 |
T |
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| Q |
119 |
ccaacacaactctatctttttaaacccatactagagattataggaaggaatttctaagagatgaaaaaatagaaaatcaagctctccataagtttccaat |
218 |
Q |
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| T |
10473 |
ccaacacaactctatctttttaaacccatactagagattataggaaggaatttctaagagatgaaaaaatagaaaatcaagctctccataagtttccaat |
10572 |
T |
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| Q |
219 |
tgttctaaggatcataaaacaccattgcatgtttgtttacatgagagaattgaagaaaaggaatatgaatgaacatggagagggagtgaggggcgagtga |
318 |
Q |
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| T |
10573 |
tgttctaaggatcgtaaaacaccattgcatgtttgtttacatgagagaattgaagaaaaggaat----atgaacatggagagagagtgaggggcgagtga |
10668 |
T |
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| Q |
319 |
gagagtagagaaaatgagt------------gaaaatatgagatttggcctatatatagcccttaggggaaattacctgattacccttcttaactaaact |
406 |
Q |
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| T |
10669 |
gagagtagagaaaatgagtagaggaatgagggaaaatatgagatttggcctatatatagcccttaggggaaattacttgattacgcttcttaactaaact |
10768 |
T |
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| Q |
407 |
tccttacattcacttaatatgataaagatactaataaaattttacggtttcttcaaattgaattttcacataaaacaaccaacaa-gatattaattacaa |
505 |
Q |
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| T |
10769 |
tccttacattcacttaatatgataaagatactaataaaattttacggtttcttcaaattgaattttcacataaaacaaccaacaacgatattaattacaa |
10868 |
T |
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| Q |
506 |
tattttccctatgtccttctcatgagatttctcttcaattttgacctacctttgcttct |
564 |
Q |
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| T |
10869 |
tattttccctatgtccttctcctgagatttctcttcaattttgacctacttttacttct |
10927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Original strand, 20428326 - 20428365
Alignment:
| Q |
452 |
ggtttcttcaaattgaattttcacataaaacaaccaacaa |
491 |
Q |
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| T |
20428326 |
ggttttttcaaatttaattttcacataaaacaaccaacaa |
20428365 |
T |
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