View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_low_19 (Length: 561)

Name: NF17203_low_19
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17203_low_19
NF17203_low_19
[»] chr1 (10 HSPs)
chr1 (19-527)||(9336774-9337276)
chr1 (251-528)||(9363680-9363951)
chr1 (19-198)||(9363956-9364135)
chr1 (19-174)||(9242909-9243063)
chr1 (413-528)||(9243289-9243405)
chr1 (275-374)||(9243178-9243277)
chr1 (19-172)||(9467103-9467256)
chr1 (19-90)||(9257877-9257948)
chr1 (19-90)||(9299761-9299832)
chr1 (29-86)||(8961975-8962032)
[»] chr6 (1 HSPs)
chr6 (19-520)||(15910762-15911254)
[»] scaffold0690 (1 HSPs)
scaffold0690 (19-520)||(851-1344)
[»] chr3 (1 HSPs)
chr3 (19-84)||(9171170-9171235)


Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Complemental strand, 9337276 - 9336774
Alignment:
Q  19 ttaaagccctataatccttcaaaaagttttcaattcttgtatgatcttcacttttcatcttaaaatagcgatatatttgaaaaataaaaccaaatacaag 118  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9337276 ttaaagcactgtaatccttcaaaaagttttcaattcttgtatgatcttcgcttttcatcttaaaatagcgatatatttgaaaaataaatccaaatacaag 9337177  T
Q  119 aagaagcacagttaagccaatgattgcacctacaaataaaacattcaatatccttataaaattctctgcaacataatttacaaaaattcttttaaatctg 218  Q
    || |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  9337176 aacaagcacagttgagccaatcattgcacctacaaattaaacattcaatatccttataaaattctcagcaacataatttattaaaattcttttaaatctg 9337077  T
Q  219 aaccaaacccaaaaacaaactaaatgagttagaaaagtgaatttatctcacctgtagaggataaaataatcttctttgatttgttcttgcatttaaagca 318  Q
    |||||| ||||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  9337076 aaccaaccccaaaaacaaaccaaatgaagtagaaaagtgaatttatctcacctgcagaggataaaataatcttctttgatttgttcttgcatttaaaaca 9336977  T
Q  319 tcctttgtcaatatttgtttccgaccatgataatgagattgaagtttgtcgtatcgtatacccattataagaaaatcccggatccggaagaataaggggt 418  Q
    ||| ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||   |||| || | |   |||||||||||||||||    
T  9336976 tccattgtcaagatttgtttccgaccatgataatgagattgaggtttgtagtatcgtatacccatt---agaatattctg---ccggaagaataaggggt 9336883  T
Q  419 gaaactcgttgagacaatttggtgcagaatacaaggttcaagtcaaccatatcatcctcagatgctgccatataaattggacaagaaatcaggtcctgct 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336882 gaaactcgttgagacaatttggtgcagaatacaaggttcaagtcaaccatatcatcctcagatgctgccatataaattggacaagaaatcaggtcctgct 9336783  T
Q  519 gctcatctc 527  Q
    |||||||||    
T  9336782 gctcatctc 9336774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 251 - 528
Target Start/End: Complemental strand, 9363951 - 9363680
Alignment:
Q  251 aaaagtgaatttatctcacctgtagaggataaaataatcttctttgatttgttcttgcatttaaagcatcctttgtcaatatttgtttccgaccatgata 350  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||    
T  9363951 aaaagtgaatttatctcacctgcagaggataaaattatcttctttgatttgttcttgcatttaaaacatccattgtcaagatttgtttccgaccatgata 9363852  T
Q  351 atgagattgaagtttgtcgtatcgtatacccattataagaaaatcccggatccggaagaataaggggtgaaactcgttgagacaatttggtgcagaatac 450  Q
    |||||||||| |||||||||||||||||||||||   |||| || | |   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9363851 atgagattgaggtttgtcgtatcgtatacccatt---agaatattctg---ccggaagaataaggggtgaaactcgttgagacaatttggtgcagaatac 9363758  T
Q  451 aaggttcaagtcaaccatatcatcctcagatgctgccatataaattggacaagaaatcaggtcctgctgctcatctcc 528  Q
    ||| ||||| | ||||||||| || ||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9363757 aagattcaatttaaccatatcgtcgtcaaatgctgccatataaattggacaagaaatcatgtcctgctgctcatctcc 9363680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 9364135 - 9363956
Alignment:
Q  19 ttaaagccctataatccttcaaaaagttttcaattcttgtatgatcttcacttttcatcttaaaatagcgatatatttgaaaaataaaaccaaatacaag 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9364135 ttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcgcttttcatcttaaaatagcgatatatttgaaaaataaatccaaatacaag 9364036  T
Q  119 aagaagcacagttaagccaatgattgcacctacaaataaaacattcaatatccttataaaattctctgcaacataattta 198  Q
    || |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  9364035 aacaagcacagttgagccaatcattgcacctacaaattaaacattcaatatccttataaaattctcagcaacataattta 9363956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 9242909 - 9243063
Alignment:
Q  19 ttaaagccctataatccttcaaaaagttttcaattcttgtatgatcttcacttttcatcttaaaatagcgatatatttgaaaaataaaaccaaatacaag 118  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  9242909 ttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcacttttcatcttaaaatagtgatatattttaaaaataaaaccaaatacaag 9243008  T
Q  119 aagaagcacagttaagccaatgattgcacctacaaataaaacattcaatatcctta 174  Q
    || |||||||||  |||||||||||||||||||||||  ||||||||| |||||||    
T  9243009 aacaagcacagtagagccaatgattgcacctacaaat-taacattcaacatcctta 9243063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 413 - 528
Target Start/End: Original strand, 9243289 - 9243405
Alignment:
Q  413 aggggtgaaactcgttgagacaatttggtgcagaatacaaggttcaagtc-aaccatatcatcctcagatgctgccatataaattggacaagaaatcagg 511  Q
    |||||||||||||||||||| |||||||| ||| |||||||||| || |  ||| ||||| |  ||| |||||||||||||||||||||||||||||| |    
T  9243289 aggggtgaaactcgttgagataatttggtacaggatacaaggtttaaatttaactatatcgttgtcaaatgctgccatataaattggacaagaaatcatg 9243388  T
Q  512 tcctgctgctcatctcc 528  Q
    |||||||||||| ||||    
T  9243389 tcctgctgctcagctcc 9243405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 9243178 - 9243277
Alignment:
Q  275 gaggataaaataatcttctttgatttgttcttgcatttaaagcatcctttgtcaatatttgtttccgaccatgataatgagattgaagtttgtcgtatcg 374  Q
    |||||||||||||||||||||||||| ||  ||||||| ||||||||||||||||  ||||||| ||||||||| |||||||| ||  ||||||||||||    
T  9243178 gaggataaaataatcttctttgatttattgctgcattttaagcatcctttgtcaaagtttgttttcgaccatgacaatgagatcgagttttgtcgtatcg 9243277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 9467103 - 9467256
Alignment:
Q  19 ttaaagccctataatccttcaaaaagttttcaattcttgtatgatcttcacttttcatcttaaaatagcgatatatttgaaaaataaaaccaaatacaag 118  Q
    |||||||| |||||||||||||||||||||| ||||||  ||||||||| | ||||||||| ||||||||||| ||| ||| |||    || |  |||||    
T  9467103 ttaaagccttataatccttcaaaaagttttcgattcttacatgatcttcgcctttcatcttgaaatagcgataaattcgaacaatggtgccgagaacaag 9467202  T
Q  119 aagaagcacagttaagccaatgattgcacctacaaataaaacattcaatatcct 172  Q
     |  |||| |||| | || |||||| ||||||||||| ||||||||||||||||    
T  9467203 taatagcaaagttgaaccgatgattccacctacaaattaaacattcaatatcct 9467256  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 9257877 - 9257948
Alignment:
Q  19 ttaaagccctataatccttcaaaaagttttcaattcttgtatgatcttcacttttcatcttaaaatagcgat 90  Q
    |||||||| |||||||||||||||||||||| ||||||  ||||||||| | ||||||||| |||| |||||    
T  9257877 ttaaagccttataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatcttgaaatggcgat 9257948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 9299832 - 9299761
Alignment:
Q  19 ttaaagccctataatccttcaaaaagttttcaattcttgtatgatcttcacttttcatcttaaaatagcgat 90  Q
    |||||||| |||||||||||||||||||||| ||||||  ||||||||| | ||||||||| |||| |||||    
T  9299832 ttaaagccttataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatcttgaaatggcgat 9299761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 8962032 - 8961975
Alignment:
Q  29 ataatccttcaaaaagttttcaattcttgtatgatcttcacttttcatcttaaaatag 86  Q
    ||||||||||||||||||||||| ||| || |||||||| | ||||||| || |||||    
T  8962032 ataatccttcaaaaagttttcaagtctagtttgatcttctcctttcatcctataatag 8961975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 9e-87; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 19 - 520
Target Start/End: Original strand, 15910762 - 15911254
Alignment:
Q  19 ttaaagccctataatccttcaaaaagttttcaattcttgtatgatcttcacttttcatcttaaaatagcgatatatttgaaaaataaaaccaaatacaag 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |||| ||| | |||||||||||||||  ||||||||| |||    
T  15910762 ttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcgcctttcattttaacatatctatatatttgaaaaatggaaccaaatagaag 15910861  T
Q  119 aagaagcacagttaagccaatgattgcacctacaaataaaacattcaatatccttataaaattctctgcaacataatttacaaaaattcttttaaatctg 218  Q
    || ||| | |||| ||||||||||| ||||||||||| |||||||||||||| ||| | ||||||| |   ||||||| | | |  | || |||||||||    
T  15910862 aacaagaaaagttgagccaatgattacacctacaaattaaacattcaatatcattaaataattctcagatgcataattaaaagatttcctcttaaatctg 15910961  T
Q  219 aaccaaacccaaaaacaaactaaatgagttagaaaagtgaatttatctcacctgtagaggataaaataatcttc---tttgatttgttcttgcatttaaa 315  Q
    ||||||  |||||| ||||| ||||||| || |||| ||||   |||||||||| |||||||||||||||||||   |||||||||| ||| ||||  ||    
T  15910962 aaccaacaccaaaatcaaacaaaatgaggtataaaaatgaaggaatctcacctgcagaggataaaataatcttcttttttgatttgtgcttacattctaa 15911061  T
Q  316 gcatcctttgtcaatatttgtttccgaccatgataatgagattgaagtttgtcgtatcgtatacccattataagaaaatcccggatccggaagaataagg 415  Q
    |||||||||||||||  ||||| |||||||||||||| |||||||  ||||| ||||      |||| ||| | | | ||    ||||| ||||||||||    
T  15911062 gcatcctttgtcaattgttgttcccgaccatgataataagattgagttttgttgtat------ccca-tat-acagattc----atccgaaagaataagg 15911149  T
Q  416 ggtgaaactcgttgagacaatttggtgcagaatacaaggttcaagtcaaccatatcatcctcagatgctgccatataaattggacaagaaatcaggtcct 515  Q
    || ||||||||||||||||||||||||||| ||||||||||||| ||||| | |||||| | | || |||| ||||||||||||||||||||||  ||||    
T  15911150 ggagaaactcgttgagacaatttggtgcaggatacaaggttcaattcaacgacatcatcgtaaaatcctgcaatataaattggacaagaaatcatatcct 15911249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 160; Significance: 5e-85; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 19 - 520
Target Start/End: Complemental strand, 1344 - 851
Alignment:
Q  19 ttaaagccctataatccttcaaaaagttttcaattcttgtatgatcttcacttttcatcttaaaatagcgatatatttgaaaaataaaaccaaatacaag 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |||| ||| | |||||||||||||||  ||||||||| |||    
T  1344 ttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcgcctttcattttaacatatctatatatttgaaaaatggaaccaaatagaag 1245  T
Q  119 aagaa-gcacagttaagccaatgattgcacctacaaataaaacattcaatatccttataaaattctctgcaacataatttacaaaaattcttttaaatct 217  Q
    || || ||| |||| ||||||||||| ||||||||||| |||||||||||||| ||| | ||||||| |   ||||||| | | |  | || ||||||||    
T  1244 aacaaggcagagttgagccaatgattacacctacaaattaaacattcaatatcattaaataattctcagatgcataattaaaagatttcctcttaaatct 1145  T
Q  218 gaaccaaacccaaaaacaaactaaatgagttagaaaagtgaatttatctcacctgtagaggataaaataatcttc---tttgatttgttcttgcatttaa 314  Q
    |||||||  |||||| ||||| ||||||| || |||| ||||   |||||||||| |||||||||||||||||||   |||||||||| ||| ||||  |    
T  1144 gaaccaacaccaaaatcaaacgaaatgaggtataaaaatgaaggaatctcacctgcagaggataaaataatcttcttttttgatttgtgcttacattcta 1045  T
Q  315 agcatcctttgtcaatatttgtttccgaccatgataatgagattgaagtttgtcgtatcgtatacccattataagaaaatcccggatccggaagaataag 414  Q
    ||||||||||||||||  ||||| |||||||||||||| |||||||  ||||| ||||      |||| ||| | | | ||    ||||| |||||||||    
T  1044 agcatcctttgtcaattgttgttcccgaccatgataataagattgagttttgttgtat------ccca-tat-acagattc----atccgaaagaataag 957  T
Q  415 gggtgaaactcgttgagacaatttggtgcagaatacaaggttcaagtcaaccatatcatcctcagatgctgccatataaattggacaagaaatcaggtcc 514  Q
    ||| ||||||||||||||||||||||||||| ||||||||||||| ||||| | |||||| | | || |||| ||||||||||||||||||||||  |||    
T  956 gggagaaactcgttgagacaatttggtgcaggatacaaggttcaattcaacgacatcatcgtaaaatcctgcaatataaattggacaagaaatcatatcc 857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 9171235 - 9171170
Alignment:
Q  19 ttaaagccctataatccttcaaaaagttttcaattcttgtatgatcttcacttttcatcttaaaat 84  Q
    |||||||| | |||||||||||||||||||| |||||| |||||||||| | ||||||||| ||||    
T  9171235 ttaaagccttgtaatccttcaaaaagttttcgattcttttatgatcttcgcctttcatcttgaaat 9171170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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