View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_20 (Length: 556)
Name: NF17203_low_20
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 556
Target Start/End: Complemental strand, 46612453 - 46611919
Alignment:
| Q |
18 |
atttatgcatattagtcaaaatctattttaagagaggaaattgtatgagctaaccaatccctactagttagaaaaaattaaattaaattaaatggggtag |
117 |
Q |
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| T |
46612453 |
atttatgcatattagtcaaaatctattttatgagaggaaattgtatgagctaacgaatccctactagttagaaaaaattaaat----------ggggtag |
46612364 |
T |
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| Q |
118 |
ttgatctattatgaaccacctaaagaaggggtggacatgtcaaagttgccgttatatttatgaactccgaaatttccaatgcagaagaaaacatagttat |
217 |
Q |
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| T |
46612363 |
ttgatctattatgaaccacctaaagaagtggtggacatgtcaaagttgccgttatatttatgaactccgaaatttccaatgcagaagaaaacatagttat |
46612264 |
T |
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| Q |
218 |
taccgtcaaaatacattaaataccaacaacttgttagtacta----tcttaccttacattacacactcattcac--tcactcaccttcttcgtactctcc |
311 |
Q |
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| T |
46612263 |
taccgtcaaaatacattaaataccaacaacttgttagtactaactatcttaccttacattacacactcattcacactcactcaccttcttcgtactctcc |
46612164 |
T |
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| Q |
312 |
gtcagttagtgtcagtcatttcatcaaacacttacaatgcaatcagttcagattcaacaacaacttccctccactctccgtccttcaccgctcgaaccac |
411 |
Q |
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| T |
46612163 |
gtcagttagtgtcagtcatttcatcaaacacttacaatgcaatcagttcagattcaacaacaacttccctccactctccgtccttcaccgctcgaaccac |
46612064 |
T |
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| Q |
412 |
ttcgccgtaaatcctccaatgccgccaccgccaccgccaaaacaaagagagttactcgtatctccgccgcggtcaccaccaccactgcgcctcaaagaga |
511 |
Q |
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| T |
46612063 |
ttcgccgtaaatcctccaatgccgccaccgccaccgccaaaacaaagagagttactcgtatctccgccgcggtcaccaccaccactgcgcctcaaagaga |
46611964 |
T |
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| Q |
512 |
aaaggatccaaagaagcgtgttgtgattaccggtatgggtcttgc |
556 |
Q |
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| T |
46611963 |
aaaggatccaaagaagcgtgttgtgattaccggtatgggtcttgc |
46611919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 450
Target Start/End: Original strand, 38471369 - 38471447
Alignment:
| Q |
372 |
caacttccctccactctccgtccttcaccgctcgaaccacttcgccgtaaatcctccaatgccgccaccgccaccgcca |
450 |
Q |
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| T |
38471369 |
caactacccttcactcttcgcccttcaccactcgaaccacttcgcaaaaaaccctccaatgcggccaccaccgccgcca |
38471447 |
T |
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