View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_low_21 (Length: 555)

Name: NF17203_low_21
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17203_low_21
NF17203_low_21
[»] chr8 (6 HSPs)
chr8 (15-538)||(41930650-41931173)
chr8 (81-142)||(4050438-4050500)
chr8 (48-122)||(45371069-45371143)
chr8 (67-139)||(1310129-1310201)
chr8 (48-140)||(1318609-1318701)
chr8 (96-144)||(18735797-18735845)
[»] chr1 (7 HSPs)
chr1 (44-140)||(6025937-6026033)
chr1 (81-138)||(15956878-15956935)
chr1 (85-142)||(46937566-46937623)
chr1 (66-142)||(47847979-47848054)
chr1 (90-140)||(13277625-13277675)
chr1 (50-111)||(15255191-15255252)
chr1 (87-143)||(35655430-35655486)
[»] chr5 (4 HSPs)
chr5 (250-364)||(2203159-2203273)
chr5 (90-142)||(39647140-39647192)
chr5 (81-147)||(11257719-11257785)
chr5 (60-112)||(631474-631526)
[»] chr4 (6 HSPs)
chr4 (81-139)||(27722416-27722474)
chr4 (83-139)||(4145259-4145315)
chr4 (85-140)||(33714235-33714290)
chr4 (85-142)||(26275548-26275605)
chr4 (81-138)||(37579594-37579651)
chr4 (81-121)||(207488-207528)
[»] chr2 (4 HSPs)
chr2 (85-142)||(39597573-39597630)
chr2 (59-139)||(28804335-28804415)
chr2 (83-142)||(41012701-41012760)
chr2 (84-142)||(29378505-29378563)
[»] chr7 (9 HSPs)
chr7 (86-142)||(37233413-37233469)
chr7 (50-139)||(2219498-2219587)
chr7 (59-122)||(24942511-24942574)
chr7 (59-122)||(24945623-24945686)
chr7 (68-139)||(38622870-38622941)
chr7 (88-142)||(29440324-29440378)
chr7 (73-106)||(21450951-21450984)
chr7 (56-120)||(28989994-28990058)
chr7 (68-140)||(29000465-29000540)
[»] chr6 (6 HSPs)
chr6 (81-147)||(19390935-19391001)
chr6 (87-142)||(3736988-3737043)
chr6 (81-136)||(5730197-5730252)
chr6 (44-106)||(4381951-4382013)
chr6 (51-99)||(27832843-27832891)
chr6 (88-140)||(29165841-29165893)
[»] chr3 (7 HSPs)
chr3 (81-119)||(14794298-14794336)
chr3 (81-138)||(2990986-2991043)
chr3 (90-139)||(29208264-29208313)
chr3 (85-139)||(162902-162956)
chr3 (85-142)||(54084308-54084365)
chr3 (81-121)||(38884080-38884120)
chr3 (81-145)||(54838575-54838639)


Alignment Details
Target: chr8 (Bit Score: 512; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 15 - 538
Target Start/End: Complemental strand, 41931173 - 41930650
Alignment:
Q  15 atgaatcttaagcagtttgatcaaatccagctgcacaacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41931173 atgaatcttaagcagtttgatcaaatccagctgcacaacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtg 41931074  T
Q  115 gaacaataacaatttattcaaattccgcaacaccattgtgtgctgctattcaacaaagctaaattgctcctaaaatgctatttcattttttggtaatgaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41931073 gaacaataacaatttattcaaattccgcaacaccattgtgtgctgctattcaacaaagctaaattgctcctaaaatgctatttcattttttggtaatgaa 41930974  T
Q  215 agttccgctatcggttgactctgcttgcagatgcatgagaaagatgtatacatatcataccttccacttgcacacatctttgacaggattattgaagagg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41930973 agttccgctatcggttgactctgcttgcagatgcatgagaaagatgtatacatatcataccttccacttgcacacatctttgacaggattattgaagagg 41930874  T
Q  315 gaatcatatggagtggtgctgcattaggtttctggcgaggggtgagtataaatatatacgtgataaatctttcattacttaatgaaggcttgatgtgatt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41930873 gaatcatatggagtggtgctgcattaggtttctggcgaggggtgagtataaatatatacgtgataaatctttcattacttaatgaaggcttgatgtgatt 41930774  T
Q  415 atagtatattggattttcttaatattaacatcaagtaagtcaaaatttgtatttgagattaatatcagcactattatttattcaatgtggctgcaggata 514  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41930773 atagtatattggattttcttaaatttaacatcaagtaagtcaaaatttgtatttgagattaatatgagcactattatttattcaatgtggctgcaggata 41930674  T
Q  515 tcaaattgttgatggaagacattg 538  Q
    ||||||||||||||||||||||||    
T  41930673 tcaaattgttgatggaagacattg 41930650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 4050500 - 4050438
Alignment:
Q  81 tttgacaatattttgtactaaatagcttatcgtggaacaataac-aatttattcaaattccgc 142  Q
    ||||||||||||||| |||||||||| ||| ||| ||||||||| | ||| ||||||||||||    
T  4050500 tttgacaatattttggactaaatagcatatggtgaaacaataacgatttttttcaaattccgc 4050438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 45371069 - 45371143
Alignment:
Q  48 cacaacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaata 122  Q
    ||||||| ||||||||||||| || ||  | | |||||||| ||||||||||||||||| ||| | |||||||||    
T  45371069 cacaacagtgctatagtgccgttatagtagctatttgacaacattttgtactaaatagcatattgcggaacaata 45371143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 1310201 - 1310129
Alignment:
Q  67 cgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 139  Q
    ||||| ||||| | ||| ||||||| |||||||||||||  ||||  ||||||||| |||||| |||||||||    
T  1310201 cgctatagccgctatttcacaatatattgtactaaatagtgtatcaaggaacaatagcaatttgttcaaattc 1310129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 1318609 - 1318701
Alignment:
Q  48 cacaacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattcc 140  Q
    |||||||||||||||| | | ||||||| | | |||||||| || | || ||||||||||||| | ||||||||||  | || ||||||||||    
T  1318609 cacaacaatgctatagcgtcactacagctgctatttgacaacatgtagttctaaatagcttattgcggaacaataaggacttgttcaaattcc 1318701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 18735845 - 18735797
Alignment:
Q  96 tactaaatagcttatcgtggaacaataacaatttattcaaattccgcaa 144  Q
    ||||||||||  || ||||||| ||||||||||| ||||||||||||||    
T  18735845 tactaaatagagtaccgtggaaaaataacaatttgttcaaattccgcaa 18735797  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 6025937 - 6026033
Alignment:
Q  44 gctgcacaacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattcc 140  Q
    ||||| ||||| |||||||| || |||| ||||  | |||||||| ||||||||||||||||| ||||| ||||||||||| |||| ||||||||||    
T  6025937 gctgcccaacagtgctatagcgctgctatagccactatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaattcc 6026033  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 15956935 - 15956878
Alignment:
Q  81 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaatt 138  Q
    |||||||| | ||||||||||||||| ||| | |||||||||||||||| ||||||||    
T  15956935 tttgacaacactttgtactaaatagcgtatggcggaacaataacaatttgttcaaatt 15956878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 46937623 - 46937566
Alignment:
Q  85 acaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 142  Q
    ||||||||||||||||||||||  |||| ||||||||| || ||| ||||||||||||    
T  46937623 acaatattttgtactaaatagcgcatcgcggaacaatagcactttgttcaaattccgc 46937566  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 47847979 - 47848054
Alignment:
Q  66 ccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 142  Q
    |||||| ||||| | |||||||| ||||||||| |||| || ||||||||||||||| | |||| ||||||||||||    
T  47847979 ccgctatagccgctatttgacaacattttgtac-aaatggcatatcgtggaacaatagcgatttgttcaaattccgc 47848054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 13277675 - 13277625
Alignment:
Q  90 attttgtactaaatagcttatcgtggaacaataacaatttattcaaattcc 140  Q
    ||||||||||||||||| ||| ||||||||||||| ||||  |||||||||    
T  13277675 attttgtactaaatagcgtatagtggaacaataacgatttgctcaaattcc 13277625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 15255191 - 15255252
Alignment:
Q  50 caacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatc 111  Q
    ||||| |||||||||||||||| ||||  ||||| |||||||| || |||||||||| ||||    
T  15255191 caacattgctatagtgccgctatagccactgtttcacaatattatgcactaaatagcatatc 15255252  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 35655430 - 35655486
Alignment:
Q  87 aatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgca 143  Q
    |||||||||||||||||||| ||  | ||||  |||||||||| |||||||||||||    
T  35655430 aatattttgtactaaatagcatagtgcggaattataacaatttgttcaaattccgca 35655486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 250 - 364
Target Start/End: Original strand, 2203159 - 2203273
Alignment:
Q  250 tgagaaagatgtatacatatcataccttccacttgcacacatctttgacaggattattgaagagggaatcatatggagtggtgctgcattaggtttctgg 349  Q
    |||||| ||||| ||| ||||||||||||| || |||||||||||||| ||| | |||||||||  | | ||||||  ||||| | || |||| ||||||    
T  2203159 tgagaaggatgtgtacttatcataccttcctctcgcacacatctttgatagggtcattgaagagacatttatatggcatggtggttcaataggcttctgg 2203258  T
Q  350 cgaggggtgagtata 364  Q
    || ||||||||||||    
T  2203259 cgcggggtgagtata 2203273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 39647140 - 39647192
Alignment:
Q  90 attttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 142  Q
    ||||||||||||||||| |||||  |||||||||| |||| ||||||||||||    
T  39647140 attttgtactaaatagcatatcgcagaacaataacgatttgttcaaattccgc 39647192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 11257785 - 11257719
Alignment:
Q  81 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgcaacac 147  Q
    |||||||| ||||||||||||||||| ||||||  ||||||| | |||| |||| ||||||| ||||    
T  11257785 tttgacaacattttgtactaaatagcatatcgtataacaatagcgatttgttcatattccgctacac 11257719  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 631474 - 631526
Alignment:
Q  60 atagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcg 112  Q
    ||||||| |||| ||||| | | |||||||||||||||||||||||| |||||    
T  631474 atagtgcagctatagccgctatatgacaatattttgtactaaatagcgtatcg 631526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 27722416 - 27722474
Alignment:
Q  81 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 139  Q
    ||||||||||||||||||| |||||| ||||||||||||||| |||||  |||||||||    
T  27722416 tttgacaatattttgtacttaatagcatatcgtggaacaatagcaattagttcaaattc 27722474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 4145259 - 4145315
Alignment:
Q  83 tgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 139  Q
    |||||| |||||||||| |||||| ||| |||||||||||||||||| |||||||||    
T  4145259 tgacaacattttgtactgaatagcgtatggtggaacaataacaatttgttcaaattc 4145315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 33714235 - 33714290
Alignment:
Q  85 acaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattcc 140  Q
    ||||||||||||||||||| |||||||||||||||| | | |||| ||||||||||    
T  33714235 acaatattttgtactaaatggcttatcgtggaacaacagcgatttgttcaaattcc 33714290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 26275548 - 26275605
Alignment:
Q  85 acaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 142  Q
    |||||||||||||||||||||| |||  |||||||||| | |||| ||||||| ||||    
T  26275548 acaatattttgtactaaatagcgtattttggaacaatagcgatttgttcaaatcccgc 26275605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 37579594 - 37579651
Alignment:
Q  81 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaatt 138  Q
    |||||||| | || |||||||||||| ||||| ||||||||||| ||||||| |||||    
T  37579594 tttgacaacacttagtactaaatagcatatcgcggaacaataacgatttattaaaatt 37579651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 207528 - 207488
Alignment:
Q  81 tttgacaatattttgtactaaatagcttatcgtggaacaat 121  Q
    |||||||||| ||||||||||||||| ||||| ||||||||    
T  207528 tttgacaatactttgtactaaatagcatatcgcggaacaat 207488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 39597630 - 39597573
Alignment:
Q  85 acaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 142  Q
    |||||||||||||||||||||| ||||| ||||||||| | ||||||| |||||||||    
T  39597630 acaatattttgtactaaatagcgtatcgcggaacaatagcgatttatttaaattccgc 39597573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 28804415 - 28804335
Alignment:
Q  59 tatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 139  Q
    ||||||| | ||| ||||||| |||||||||| |||||||||||||||||||  || ||||||| | |||| |||||||||    
T  28804415 tatagtgtcactatagccgttatttgacaatactttgtactaaatagcttattctgaaacaatagcgatttgttcaaattc 28804335  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 41012760 - 41012701
Alignment:
Q  83 tgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 142  Q
    |||||||| |||| |||||||||  ||||| |||||||||||||||| ||||||| ||||    
T  41012760 tgacaataatttgcactaaatagtgtatcgaggaacaataacaatttgttcaaataccgc 41012701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 29378563 - 29378505
Alignment:
Q  84 gacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 142  Q
    ||||||| ||||||| ||||||| |||||  |||||||| |||||| ||||||||||||    
T  29378563 gacaatactttgtacaaaatagcgtatcgcagaacaatatcaatttgttcaaattccgc 29378505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 37233469 - 37233413
Alignment:
Q  86 caatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 142  Q
    |||||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||    
T  37233469 caatattttgtattaaatagtgtatcgtagaacaataacaatttgttcaaattccgc 37233413  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 2219498 - 2219587
Alignment:
Q  50 caacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 139  Q
    ||||||||||||||  ||| || | ||| | |||||||||||||||||||||||||| ||||   |||||||||| || | |||||||||    
T  2219498 caacaatgctatagcaccgttataaccgctatttgacaatattttgtactaaatagcatatcagagaacaataacgatatgttcaaattc 2219587  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 24942574 - 24942511
Alignment:
Q  59 tatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaata 122  Q
    ||||| ||||||||||| | | |||||||| |||||||||||| |||| |||| ||||||||||    
T  24942574 tatagcgccgctacagctgctatttgacaacattttgtactaattagcgtatcatggaacaata 24942511  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 24945686 - 24945623
Alignment:
Q  59 tatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaata 122  Q
    ||||| ||||||||||||| | |||||||| ||||||| |||  |||| |||||||||||||||    
T  24945686 tatagcgccgctacagccgctatttgacaacattttgtgctagttagcgtatcgtggaacaata 24945623  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 38622870 - 38622941
Alignment:
Q  68 gctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 139  Q
    |||| ||||| | |||||||| ||||||| ||||||||  |||| |||||||||| | ||||||||||||||    
T  38622870 gctatagccgctatttgacaacattttgtgctaaatagtgtatcatggaacaatatcgatttattcaaattc 38622941  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 29440324 - 29440378
Alignment:
Q  88 atattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 142  Q
    ||||||||||||||||| | ||||||||||||||| || ||| |||||| |||||    
T  29440324 atattttgtactaaataacatatcgtggaacaatagcagttttttcaaactccgc 29440378  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 21450951 - 21450984
Alignment:
Q  73 agccgttgtttgacaatattttgtactaaatagc 106  Q
    |||||||||||||||||| |||||||||||||||    
T  21450951 agccgttgtttgacaatagtttgtactaaatagc 21450984  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 28989994 - 28990058
Alignment:
Q  56 tgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagcttatcgtggaacaa 120  Q
    ||||||||||| |||||||||| |  |  ||||||||||||||||||||||  || |||||||||    
T  28989994 tgctatagtgctgctacagccgcttatccacaatattttgtactaaatagcaaatagtggaacaa 28990058  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 29000465 - 29000540
Alignment:
Q  68 gctacagccgttgtttgacaatattttgtacta--aatagctta-tcgtggaacaataacaatttattcaaattcc 140  Q
    |||||||||||| ||| ||||||||||||||||  |||||| || ||||||||||||| |  ||| ||||||||||    
T  29000465 gctacagccgttatttcacaatattttgtactattaatagcatattcgtggaacaatagctgtttgttcaaattcc 29000540  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 19391001 - 19390935
Alignment:
Q  81 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgcaacac 147  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||  |||  ||||||||||| ||||    
T  19391001 tttgacaatactttgtactaaatagcttattgtggaacaacaacggtttggtcaaattccgctacac 19390935  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 3737043 - 3736988
Alignment:
Q  87 aatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 142  Q
    |||| |||||||| |||||| |||||  ||||||||||||||| ||||||||||||    
T  3737043 aatagtttgtactgaatagcatatcgcagaacaataacaatttgttcaaattccgc 3736988  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 5730197 - 5730252
Alignment:
Q  81 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaa 136  Q
    |||||||| ||||||||||||||||| |||| |||||||| | | |||||||||||    
T  5730197 tttgacaagattttgtactaaatagcatatcatggaacaagagcgatttattcaaa 5730252  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 4381951 - 4382013
Alignment:
Q  44 gctgcacaacaatgctatagtgccgctacagccgttgtttgacaatattttgtactaaatagc 106  Q
    |||||||||||||||| ||  ||| ||| |||| || |||||||| |||||||||||||||||    
T  4381951 gctgcacaacaatgctctacagccactatagcctttatttgacaacattttgtactaaatagc 4382013  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 27832891 - 27832843
Alignment:
Q  51 aacaatgctatagtgccgctacagccgttgtttgacaatattttgtact 99  Q
    |||||| ||||||||| |||| ||||||| || ||||||||||||||||    
T  27832891 aacaatactatagtgctgctatagccgttattcgacaatattttgtact 27832843  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 29165893 - 29165841
Alignment:
Q  88 atattttgtactaaatagcttatcgtggaacaataacaatttattcaaattcc 140  Q
    |||||||||| |||||||  ||||  |||||||||||||||| ||||||||||    
T  29165893 atattttgtattaaatagagtatctaggaacaataacaatttgttcaaattcc 29165841  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 14794298 - 14794336
Alignment:
Q  81 tttgacaatattttgtactaaatagcttatcgtggaaca 119  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  14794298 tttgacaatattttgtactaaatagcgtatcgtggaaca 14794336  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 2990986 - 2991043
Alignment:
Q  81 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaatt 138  Q
    |||||||| ||||||||||||||||| ||||||||||||| |  ||||| ||||||||    
T  2990986 tttgacaacattttgtactaaatagcgtatcgtggaacaaaagaaatttgttcaaatt 2991043  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 29208313 - 29208264
Alignment:
Q  90 attttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 139  Q
    ||||||||||||| ||| ||||||||||||||||| |||| |||||||||    
T  29208313 attttgtactaaacagcgtatcgtggaacaataacgatttgttcaaattc 29208264  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 162956 - 162902
Alignment:
Q  85 acaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattc 139  Q
    ||||||||||||||||||||||  ||||  ||| ||||||||||| |||||||||    
T  162956 acaatattttgtactaaatagcgcatcgcagaataataacaatttgttcaaattc 162902  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 54084365 - 54084308
Alignment:
Q  85 acaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgc 142  Q
    ||||||||||| |||||||||| ||| |||||||| || || ||| ||||||||||||    
T  54084365 acaatattttgcactaaatagcgtattgtggaacattatcagtttgttcaaattccgc 54084308  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 38884080 - 38884120
Alignment:
Q  81 tttgacaatattttgtactaaatagcttatcgtggaacaat 121  Q
    |||||||||||||||||| ||||||| ||| ||||||||||    
T  38884080 tttgacaatattttgtaccaaatagcatattgtggaacaat 38884120  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 54838639 - 54838575
Alignment:
Q  81 tttgacaatattttgtactaaatagcttatcgtggaacaataacaatttattcaaattccgcaac 145  Q
    |||||||| |||||||||||||| ||  | |||||||||| ||||||||  ||||||||| ||||    
T  54838639 tttgacaacattttgtactaaattgcacaccgtggaacaaaaacaatttgctcaaattccccaac 54838575  T

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