View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_low_23 (Length: 504)

Name: NF17203_low_23
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17203_low_23
NF17203_low_23
[»] chr1 (16 HSPs)
chr1 (21-191)||(52750965-52751140)
chr1 (24-188)||(24508953-24509123)
chr1 (364-458)||(52751290-52751384)
chr1 (367-449)||(24509185-24509266)
chr1 (361-449)||(50124321-50124405)
chr1 (385-449)||(29021826-29021890)
chr1 (400-449)||(52750403-52750452)
chr1 (400-449)||(31697367-31697416)
chr1 (292-335)||(52751204-52751247)
chr1 (400-457)||(968156-968213)
chr1 (395-447)||(47112345-47112397)
chr1 (105-147)||(44008175-44008217)
chr1 (400-449)||(968215-968264)
chr1 (395-446)||(968917-968968)
chr1 (400-447)||(36142366-36142413)
chr1 (390-449)||(24508445-24508506)
[»] chr3 (10 HSPs)
chr3 (21-191)||(33389972-33390147)
chr3 (24-188)||(52255014-52255184)
chr3 (361-449)||(54834184-54834272)
chr3 (363-449)||(52255247-52255332)
chr3 (395-447)||(34817582-34817634)
chr3 (410-449)||(33389422-33389461)
chr3 (395-447)||(32305024-32305076)
chr3 (395-447)||(42540954-42541006)
chr3 (292-335)||(33390211-33390254)
chr3 (401-449)||(52254514-52254564)
[»] chr4 (15 HSPs)
chr4 (24-188)||(44183305-44183475)
chr4 (29-188)||(13630474-13630639)
chr4 (24-188)||(50282419-50282589)
chr4 (364-457)||(13630333-13630425)
chr4 (365-449)||(44183542-44183625)
chr4 (361-449)||(45044624-45044711)
chr4 (363-449)||(50282652-50282737)
chr4 (60-188)||(9091824-9091962)
chr4 (363-449)||(9091674-9091758)
chr4 (400-447)||(9087095-9087142)
chr4 (418-449)||(45045065-45045096)
chr4 (400-449)||(26280323-26280372)
chr4 (412-449)||(26281017-26281054)
chr4 (404-449)||(44182798-44182845)
chr4 (400-449)||(50281915-50281966)
[»] chr2 (9 HSPs)
chr2 (18-191)||(3093907-3094078)
chr2 (400-449)||(10708383-10708432)
chr2 (400-449)||(3093390-3093438)
chr2 (395-447)||(8029762-8029814)
chr2 (395-447)||(20685883-20685935)
chr2 (395-447)||(40468848-40468900)
chr2 (400-449)||(12602345-12602395)
chr2 (395-446)||(28189700-28189751)
chr2 (395-447)||(19298323-19298375)
[»] chr6 (9 HSPs)
chr6 (21-188)||(902248-902421)
chr6 (361-451)||(902472-902562)
chr6 (400-449)||(901659-901708)
chr6 (395-447)||(12261244-12261296)
chr6 (395-447)||(27129095-27129147)
chr6 (400-447)||(20746382-20746429)
chr6 (395-447)||(16146331-16146383)
chr6 (280-335)||(10999016-10999071)
chr6 (411-447)||(20746437-20746473)
[»] chr7 (10 HSPs)
chr7 (24-187)||(17236804-17236973)
chr7 (361-457)||(30474884-30474979)
chr7 (361-449)||(14682710-14682798)
chr7 (363-447)||(17238358-17238441)
chr7 (400-449)||(8684969-8685018)
chr7 (395-449)||(18298067-18298121)
chr7 (395-447)||(17278652-17278704)
chr7 (395-447)||(30765920-30765972)
chr7 (400-449)||(17236299-17236350)
chr7 (400-449)||(25443251-25443301)
[»] chr5 (6 HSPs)
chr5 (361-449)||(38385122-38385209)
chr5 (395-447)||(6794535-6794587)
chr5 (395-446)||(23082793-23082844)
chr5 (418-449)||(38385577-38385608)
chr5 (400-449)||(13824397-13824447)
chr5 (400-449)||(24041991-24042041)
[»] scaffold0202 (1 HSPs)
scaffold0202 (395-447)||(21961-22013)
[»] chr8 (1 HSPs)
chr8 (395-447)||(13462358-13462410)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 6e-66; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 52750965 - 52751140
Alignment:
Q  21 tcgaccccagccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat-----ttaagattgaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     |||||||||||    
T  52750965 tcgaccccagccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcggagatctatggatcttaagattgaa 52751064  T
Q  116 cagttgaaaactgaaattttacaattggatgactagtataaggtgaggatattagttcattgatatctttagaaaa 191  Q
    ||||||||| || ||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  52751065 cagttgaaagcttaaattatacgattggatgagtagtataaggtgaggatattaattcattgatatctttagaaaa 52751140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 24508953 - 24509123
Alignment:
Q  24 accccagccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat-----ttaagattgaacag 118  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||     ||||||||||||||    
T  24508953 acccaagccaaatctaagaaattgcagtaatgggtcaagtagttgaaggagaaagaagaaaggttatttgcggagatctatggatcttaagattgaacag 24509052  T
Q  119 ttgaaaactgaaattttacaattggatgactag-tataaggtgaggatattagttcattgatatctttaga 188  Q
     |||||  ||||||||||||||||||||| ||| |||||||||| | |||||||| |||||||||||||||    
T  24509053 atgaaagttgaaattttacaattggatgagtagttataaggtgaaggtattagtttattgatatctttaga 24509123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 364 - 458
Target Start/End: Original strand, 52751290 - 52751384
Alignment:
Q  364 ttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataatgatgaa 458  Q
    |||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||    
T  52751290 ttgtttggtaaattaaagtgcttttttttagtgaacaaattggttgttgattgagttatgaaattgattttgtttatagatttgatgataatgaa 52751384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 367 - 449
Target Start/End: Original strand, 24509185 - 24509266
Alignment:
Q  367 tttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24509185 tttggtaaattaaagtgatttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 24509266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 361 - 449
Target Start/End: Original strand, 50124321 - 50124405
Alignment:
Q  361 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  50124321 ttgttgtttggtaaattaaagtgattttttttagtgaacaaattg----ttgattgagttatgaaattgattatgtttatagatttgat 50124405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 385 - 449
Target Start/End: Complemental strand, 29021890 - 29021826
Alignment:
Q  385 ttttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29021890 ttttttttagtgaacaaattggttgttgattgagttatgaaattgattttgtttatagatttgat 29021826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 52750452 - 52750403
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52750452 aaattggttattgattgagttatgaaattgattatgtttatagatttgat 52750403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 31697416 - 31697367
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  31697416 aaattggttattgattgagatatgaaattgattatgtttatagatttgat 31697367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 335
Target Start/End: Original strand, 52751204 - 52751247
Alignment:
Q  292 gagttggttgatatcgttagagaagcacagcggttgttgttatg 335  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  52751204 gagttggttgatatctttagagaagcacagcggttgttgttatg 52751247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 457
Target Start/End: Complemental strand, 968213 - 968156
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgattatgtttatagatttgataatgatga 457  Q
    ||||||||| |||||| || |||||||||||||||||||||| ||||||| |||||||    
T  968213 aaattggttattgattaagatatgaaattgattatgtttataaatttgatgatgatga 968156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 47112397 - 47112345
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  47112397 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 47112345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 44008175 - 44008217
Alignment:
Q  105 ttaagattgaacagttgaaaactgaaattttacaattggatga 147  Q
    ||||||||||||| |||||| ||||||||||||||||||||||    
T  44008175 ttaagattgaacaattgaaagctgaaattttacaattggatga 44008217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 968264 - 968215
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    ||||||||| |||||| || |||||||||||||||||||||| |||||||    
T  968264 aaattggttattgattaagatatgaaattgattatgtttataaatttgat 968215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 446
Target Start/End: Original strand, 968917 - 968968
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagattt 446  Q
    |||| ||||||||  ||||||||| |||||||||| ||||||||||||||||    
T  968917 tgaaaaaattggtgattgattgagatatgaaattgtttatgtttatagattt 968968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 36142413 - 36142366
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||||| || |||||| ||||||||||||||||||||||||| |||||    
T  36142413 aaattgattattgattaagttatgaaattgattatgtttatatatttg 36142366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 449
Target Start/End: Complemental strand, 24508506 - 24508445
Alignment:
Q  390 tttagtgaacaaattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 449  Q
    |||| |||| ||||||||| ||| |||||||||||||| |||  ||||||||||||||||||    
T  24508506 tttaatgaaaaaattggttattggttgagttatgaaatagattatatgtttatagatttgat 24508445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 33389972 - 33390147
Alignment:
Q  21 tcgaccccagccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat-----ttaagattgaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||     |||||||||||    
T  33389972 tcgaccccagccaaatctaagaaattgcagtaatgggtcaagtagtagaagcagagagaagaaaggttatttgcggagatctatggatcttaagattgaa 33390071  T
Q  116 cagttgaaaactgaaattttacaattggatgactagtataaggtgaggatattagttcattgatatctttagaaaa 191  Q
    ||||||||| |||||||||||| ||||  ||| || ||||||||||||||||||||||||||||||||||||||||    
T  33390072 cagttgaaagctgaaattttacgattgagtgagtattataaggtgaggatattagttcattgatatctttagaaaa 33390147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 52255014 - 52255184
Alignment:
Q  24 accccagccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat-----ttaagattgaacag 118  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||     ||||||||||||||    
T  52255014 acccaagccaaatctaagaaattgcattaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcggagatctatggatcttaagattgaacag 52255113  T
Q  119 ttgaaaactgaaattttacaattggatgactag-tataaggtgaggatattagttcattgatatctttaga 188  Q
    ||||||  |||||||||||||||||| || ||| |||||||||| | |||||||| |||||||||||||||    
T  52255114 ttgaaagttgaaattttacaattggaagagtagttataaggtgaaggtattagtttattgatatctttaga 52255184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 361 - 449
Target Start/End: Complemental strand, 54834272 - 54834184
Alignment:
Q  361 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54834272 ttgttgtttggtaaattaaagtgattttttttagtgaataaattggttgttgattgagttatgaaattgattatgtttatagatttgat 54834184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 363 - 449
Target Start/End: Original strand, 52255247 - 52255332
Alignment:
Q  363 gttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52255247 gttgtttggtaaattaaagtgatttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatatgat 52255332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 34817634 - 34817582
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  34817634 tgaaaaaattggttattgattaagttatgaaattgattatgtttatagatttg 34817582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 33389461 - 33389422
Alignment:
Q  410 ttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33389461 ttgattgagttatgaaattgattatgtttatagatttgat 33389422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 32305024 - 32305076
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  32305024 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 32305076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 42540954 - 42541006
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  42540954 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 42541006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 335
Target Start/End: Original strand, 33390211 - 33390254
Alignment:
Q  292 gagttggttgatatcgttagagaagcacagcggttgttgttatg 335  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  33390211 gagttggttgatatctttagagaagcacaacggttgttgttatg 33390254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 449
Target Start/End: Complemental strand, 52254564 - 52254514
Alignment:
Q  401 aattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 449  Q
    |||||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  52254564 aattggttattgattgagttatgaaatggattatatgtttatagatttgat 52254514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 44183305 - 44183475
Alignment:
Q  24 accccagccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat-----ttaagattgaacag 118  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||     ||||||||||||||    
T  44183305 acccaagccaaatctaagaaattgcattaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcggagatctatggatcttaagattgaacag 44183404  T
Q  119 ttgaaaactgaaattttacaattggatgactag-tataaggtgaggatattagttcattgatatctttaga 188  Q
    ||||||  ||||||||||||||||||||| ||| |||||||||| | |||||||| |||||||||||||||    
T  44183405 ttgaaagttgaaattttacaattggatgagtagttataaggtgaaggtattagtttattgatatctttaga 44183475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 29 - 188
Target Start/End: Complemental strand, 13630639 - 13630474
Alignment:
Q  29 agccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat-----ttaagattgaacagttgaa 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||    
T  13630639 agccaaatctaggaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcagagatccatggatcttaagattgaacagttgaa 13630540  T
Q  124 aactgaaattttacaattggatgactag-tataaggtgaggatattagttcattgatatctttaga 188  Q
    | |||||||||||| ||||||||| ||| |||||||||| | ||||||||||||||||||||||||    
T  13630539 agctgaaattttacgattggatgagtagttataaggtgaaggtattagttcattgatatctttaga 13630474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 50282419 - 50282589
Alignment:
Q  24 accccagccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat-----ttaagattgaacag 118  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||     |||||||||||||     
T  50282419 acccaagccaaatctaagaaattgcattaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcggagatctatggatcttaagattgaacat 50282518  T
Q  119 ttgaaaactgaaattttacaattggatgactag-tataaggtgaggatattagttcattgatatctttaga 188  Q
    ||||||  ||||||||||||||| ||||| ||| |||||||||| | |||||||| |||||||| ||||||    
T  50282519 ttgaaagttgaaattttacaatttgatgagtagttataaggtgaaggtattagtttattgatatttttaga 50282589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 364 - 457
Target Start/End: Complemental strand, 13630425 - 13630333
Alignment:
Q  364 ttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataatgatga 457  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13630425 ttgtttggtaaattaaagtgatttt-tttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagatga 13630333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 44183542 - 44183625
Alignment:
Q  365 tgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44183542 tgtttggtaaattaaagtgatttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 44183625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 361 - 449
Target Start/End: Complemental strand, 45044711 - 45044624
Alignment:
Q  361 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  45044711 ttgttgtttggtaaattaaagtgatttt-tttagtgaacaaattggttattgattgagttatgaaattgattatgtttatatatttgat 45044624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 363 - 449
Target Start/End: Original strand, 50282652 - 50282737
Alignment:
Q  363 gttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    |||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50282652 gttgtttggtaaattaaagtgacttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 50282737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 188
Target Start/End: Complemental strand, 9091962 - 9091824
Alignment:
Q  60 aagtagtagaaggagaaagaagaaaggttatttgcgaagatctat---------ttaagattgaacagttgaaaactgaaattttacaattggatgacta 150  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||||         ||||||||||||| ||||||  ||||||||||||||||||||| ||    
T  9091962 aagtagttgaaggagaaagaagaaatgttatttgcggagatctatgtatggattttaagattgaacaattgaaagttgaaattttacaattggatgagta 9091863  T
Q  151 g-tataaggtgaggatattagttcattgatatctttaga 188  Q
    | ||||||||||   |||||||| |||||||||||||||    
T  9091862 gttataaggtgaaagtattagtttattgatatctttaga 9091824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 363 - 449
Target Start/End: Complemental strand, 9091758 - 9091674
Alignment:
Q  363 gttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    |||||||||||||||||||| |||||  ||  ||||||||||| ||||| |||||||||||||||||| || |||||||||||||||    
T  9091758 gttgtttggtaaattaaagtgatttt--ttcatgaacaaattgcttgttaattgagttatgaaattgaatacgtttatagatttgat 9091674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 9087095 - 9087142
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  9087095 aaattggttattgattaagttatgaaattgattatgtttatatatttg 9087142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 449
Target Start/End: Original strand, 45045065 - 45045096
Alignment:
Q  418 gttatgaaattgattatgtttatagatttgat 449  Q
    ||||||||||||||||||||||||||||||||    
T  45045065 gttatgaaattgattatgtttatagatttgat 45045096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 26280372 - 26280323
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    ||||||||| |||||| || ||||||||| |||||||||||| |||||||    
T  26280372 aaattggttattgattaagatatgaaattcattatgtttataaatttgat 26280323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 449
Target Start/End: Original strand, 26281017 - 26281054
Alignment:
Q  412 gattgagttatgaaattgattatgtttatagatttgat 449  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  26281017 gattgagatatgaaattgtttatgtttatagatttgat 26281054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 449
Target Start/End: Complemental strand, 44182845 - 44182798
Alignment:
Q  404 tggttgttgattgagttatgaaattgat--tatgtttatagatttgat 449  Q
    ||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  44182845 tggttattgattgagttatgaaatggattatatgtttatagatttgat 44182798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 50281966 - 50281915
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 449  Q
    |||||| || |||||||||||||||||| |||  ||||||||||||||||||    
T  50281966 aaattgattattgattgagttatgaaatggattatatgtttatagatttgat 50281915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 3093907 - 3094078
Alignment:
Q  18 tattcgaccccagccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat-----ttaagatt 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| | |||||| |     ||||||||    
T  3093907 tattcgaccccaaccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaag-------gttatttgtggagatctgtggatcttaagatt 3093999  T
Q  113 gaacagttgaaaactgaaattttacaattggatgactagtataaggtgaggatattagttcattgatatctttagaaaa 191  Q
    ||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3094000 gaagagttgaaagcttaaattttacaattggatgactagtataaggtgaggatattagttcattgatatctttagaaaa 3094078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 10708432 - 10708383
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10708432 aaattggttattgattgagttatgaaattgattatgtttatagatttgat 10708383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 3093438 - 3093390
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  3093438 aaattggttattgattgagttatgaaatt-attatgtttatagatttgat 3093390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 8029762 - 8029814
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  8029762 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 8029814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 20685935 - 20685883
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  20685935 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 20685883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 40468848 - 40468900
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  40468848 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 40468900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 12602345 - 12602395
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgatt-atgtttatagatttgat 449  Q
    ||||||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  12602345 aaattggttattgattgagatatgaaattgattaatgtttatagatttgat 12602395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 446
Target Start/End: Complemental strand, 28189751 - 28189700
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagattt 446  Q
    |||| |||||| || |||||| ||||||||||||||||||||||||| ||||    
T  28189751 tgaaaaaattgattattgattaagttatgaaattgattatgtttatatattt 28189700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 19298323 - 19298375
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| | |||||||||||||| |||||||| |||||    
T  19298323 tgaaaaaattggttattgattaaattatgaaattgattttgtttatatatttg 19298375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 902248 - 902421
Alignment:
Q  21 tcgaccccagccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat-----ttaagattgaa 115  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||  ||||||||     |||||||||||    
T  902248 tcgatcccagccaaatctaagaaattgcggtaattggtcaagtagtagaaggagaaagaagaaaggttatttgcatagatctatgaatcttaagattgaa 902347  T
Q  116 cagttgaaaactgaaattttacaattggatgactag-tataaggtgaggatattagttcattgatatctttaga 188  Q
    ||||||||| |||||||||||| ||||||||| ||| |||||||||| | ||||| ||||||||||||||||||    
T  902348 cagttgaaagctgaaattttacgattggatgagtagttataaggtgaaggtattaattcattgatatctttaga 902421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 361 - 451
Target Start/End: Original strand, 902472 - 902562
Alignment:
Q  361 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataa 451  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  902472 ttgttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataa 902562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 901708 - 901659
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  901708 aaattggttattgattgagttatgaaatagattatgtttatagatttgat 901659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 12261244 - 12261296
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  12261244 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 12261296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 27129147 - 27129095
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  27129147 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 27129095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 447
Target Start/End: Original strand, 20746382 - 20746429
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  20746382 aaattggttattgattaagttatgaaattgattatgtttatatatttg 20746429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 16146383 - 16146331
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| |||||||||||||||| |||||||| |||||    
T  16146383 tgaaaaaattggttattgattaagttatgaaattgattttgtttatatatttg 16146331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 335
Target Start/End: Complemental strand, 10999071 - 10999016
Alignment:
Q  280 agtgagttggacgagttggttgatatcgttagagaagcacagcggttgttgttatg 335  Q
    ||||| ||||||||||||||||||||  ||||||||| | || |||||||||||||    
T  10999071 agtgatttggacgagttggttgatatatttagagaagtatagtggttgttgttatg 10999016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 20746437 - 20746473
Alignment:
Q  411 tgattgagttatgaaattgattatgtttatagatttg 447  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  20746437 tgattaagttatgaaattgattatgtttatatatttg 20746473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 17236804 - 17236973
Alignment:
Q  24 accccagccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat-----ttaagattgaacag 118  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||     |||||||||||||     
T  17236804 acccaagccaaatctaagaaattgcattaatgggtcaagtagtagaatgagaaagaagaaaggttatttgcggagatctatggatcttaagattgaacaa 17236903  T
Q  119 ttgaaaactgaaattttacaattggatgactag-tataaggtgaggatattagttcattgatatctttag 187  Q
    ||||||  ||||||||||||||||||||| | | |||||||| | | |||||||| ||||||||||||||    
T  17236904 ttgaaagttgaaattttacaattggatgagttgttataaggtaaaggtattagtttattgatatctttag 17236973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 361 - 457
Target Start/End: Original strand, 30474884 - 30474979
Alignment:
Q  361 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataatgatga 457  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30474884 ttgttgtttggtaaattaaagtgttttt-tttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagatga 30474979  T

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Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 361 - 449
Target Start/End: Original strand, 14682710 - 14682798
Alignment:
Q  361 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    |||||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14682710 ttgttggttggtaaattaaagtgattttttttagtgaataaattggttgttgattgagttatgaaattgattatgtttatagatttgat 14682798  T

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Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 363 - 447
Target Start/End: Original strand, 17238358 - 17238441
Alignment:
Q  363 gttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17238358 gttgtttggtaaattaaagtgatttttttta-tgaacaaattgattgttgattgagttatgaaattgattatgtttatagatttg 17238441  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 8685018 - 8684969
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  8685018 aaattggttgttgattgagttataaaattgattatgtttataggtttgat 8684969  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 449
Target Start/End: Original strand, 18298067 - 18298121
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    |||| ||||||||| ||||||||| |||||||||| |||||||||||||||||||    
T  18298067 tgaaaaaattggttattgattgagatatgaaattgtttatgtttatagatttgat 18298121  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 17278704 - 17278652
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  17278704 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 17278652  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 30765972 - 30765920
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  30765972 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 30765920  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 17236350 - 17236299
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 449  Q
    ||||||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  17236350 aaattggttattgattgagttatgaaatggattatatgtttatagatttgat 17236299  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 25443301 - 25443251
Alignment:
Q  400 aaattggttgttgattgagttatgaaattga-ttatgtttatagatttgat 449  Q
    ||||||||| | ||||||||||||||||| | |||||||||||||||||||    
T  25443301 aaattggttatagattgagttatgaaattaatttatgtttatagatttgat 25443251  T

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Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 361 - 449
Target Start/End: Complemental strand, 38385209 - 38385122
Alignment:
Q  361 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 449  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38385209 ttgttgtttggtaaattaaagtgatttt-tttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 38385122  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 6794535 - 6794587
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  6794535 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 6794587  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 446
Target Start/End: Complemental strand, 23082844 - 23082793
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagattt 446  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| ||||    
T  23082844 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatattt 23082793  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 449
Target Start/End: Original strand, 38385577 - 38385608
Alignment:
Q  418 gttatgaaattgattatgtttatagatttgat 449  Q
    ||||||||||||||||||||||||||||||||    
T  38385577 gttatgaaattgattatgtttatagatttgat 38385608  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 13824397 - 13824447
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgatt-atgtttatagatttgat 449  Q
    ||||||||| ||||| ||| ||||||||||||| |||||||||||||||||    
T  13824397 aaattggttattgatggagatatgaaattgattaatgtttatagatttgat 13824447  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 24042041 - 24041991
Alignment:
Q  400 aaattggttgttgattgagttatgaaattgatt-atgtttatagatttgat 449  Q
    ||||||||| ||||| ||| ||||||||||||| |||||||||||||||||    
T  24042041 aaattggttattgatggagatatgaaattgattaatgtttatagatttgat 24041991  T

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Target: scaffold0202 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 21961 - 22013
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  21961 tgaaaaaattggttattgattaagttatgaaattgattatgtttatagatttg 22013  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 13462410 - 13462358
Alignment:
Q  395 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 447  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  13462410 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 13462358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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