View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_24 (Length: 503)
Name: NF17203_low_24
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 24 - 399
Target Start/End: Original strand, 28917023 - 28917398
Alignment:
| Q |
24 |
gataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaatcacataattataaaacatat |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28917023 |
gataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaatcacataattataaaacatat |
28917122 |
T |
|
| Q |
124 |
ggagagagagggagagaaagtggtaatacaaggcatgattgaaacaaatatctaaccccatcagaatcaatctccgcatttgtctcaattagaaatgcaa |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
28917123 |
ggagagagagggagagaaagtggtaatacaaggcatgattgaaacaaatatctaaccccatcagaatcaatgtcagcatttgtctcaattagaaatgcaa |
28917222 |
T |
|
| Q |
224 |
gttttgagcagtgcctacaaaatcctttggttgttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagca |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28917223 |
gttttgagcagtgcctacaaaatcctttggttgttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagca |
28917322 |
T |
|
| Q |
324 |
cctaaacttcgatgctctaccgcaaaggtagcaaaaatgggaacctataaaattattcaaaagtcattcggcatcc |
399 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28917323 |
cctaaacttcgatgctctaccgcaaaggtagcaaaaatgggaacctataaaattattcaaaagtcattcggcatcc |
28917398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 147 - 398
Target Start/End: Original strand, 28926409 - 28926661
Alignment:
| Q |
147 |
taatacaaggcatgattgaaacaaatatctaaccccatcagaatcaatctccgcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaat |
246 |
Q |
| |
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||||| ||||||||||||||| ||| |||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28926409 |
taatataaggcatgattgaaaaaaacatctcaccccatcagaatcaacatcagcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaat |
28926508 |
T |
|
| Q |
247 |
cctttggttgttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaacttcgatgctctaccgc |
346 |
Q |
| |
|
|||||| || |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
28926509 |
cctttgtttcttttgacagtggcaaattcagcatcatagaagcatcttccacaaacagctattgggcaacacaagcacataaacttcgatgctctaccgc |
28926608 |
T |
|
| Q |
347 |
aaaggtagcaaaaatgggaacctat-aaaattattcaaaagtcattcggcatc |
398 |
Q |
| |
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||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||| |
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| T |
28926609 |
aaaggtagcaataatgggaacctataaaaattattcaaaagccattcagcatc |
28926661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 147 - 383
Target Start/End: Original strand, 28903376 - 28903613
Alignment:
| Q |
147 |
taatacaaggcatgattgaaacaaatatctaaccccatcagaatcaatctccgcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaat |
246 |
Q |
| |
|
||||| ||||| ||||| ||| ||| |||| |||||||||||||| | || |||||| ||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
28903376 |
taatataaggcgtgattaaaaaaaaaatcttaccccatcagaatctacgtcagcatttttctcaattagaaaggcaagttttgagcagtgcctacaaaat |
28903475 |
T |
|
| Q |
247 |
cctttggttgttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaacttcgatgctctaccgc |
346 |
Q |
| |
|
|||||| || ||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||||| |||||| ||||||| ||| || ||||| |
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| T |
28903476 |
cctttgtttcctttgacaagagcaaattcagcaccatagaagcattttccacaaaaagctattgtgcaacacaagcacataaactttgatattccaccgc |
28903575 |
T |
|
| Q |
347 |
aaaggtagcaaaaatgggaacctat-aaaattattcaa |
383 |
Q |
| |
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| |||||||| |||||||| |||| |||||||||||| |
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| T |
28903576 |
attggtagcaagaatgggaagctataaaaattattcaa |
28903613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 169 - 397
Target Start/End: Original strand, 28893394 - 28893622
Alignment:
| Q |
169 |
aaatatctaaccccatcagaatcaatctccgcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaatcctttggttgttttgacagtag |
268 |
Q |
| |
|
|||||||| |||||||||||||| | || ||||| ||||||||| | | |||||||||||||||||||||||||||||| || || |||||||| || |
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|
| T |
28893394 |
aaatatcttaccccatcagaatcgacatcaacatttttctcaattaaataggcaagttttgagcagtgcctacaaaatcctctgtttcttttgacaagag |
28893493 |
T |
|
| Q |
269 |
caaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaacttcgatgctctaccgcaaaggtagcaaaaatgggaacc |
368 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||| |||||||||||| || |||||| ||||||||||||||| | ||| || ||| |||||||||| |
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| T |
28893494 |
caaattcagcaccatggaagcattttctacaaaaagctattgggcagcacaagcacataaacttcgatgctccatggcatccgttacaataatgggaacc |
28893593 |
T |
|
| Q |
369 |
tataaaattattcaaaagtcattcggcat |
397 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
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|
| T |
28893594 |
tataaaattattcaaaagtcattcagcat |
28893622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 157 - 398
Target Start/End: Original strand, 28936622 - 28936865
Alignment:
| Q |
157 |
catgattgaaacaaatatctaaccccatcagaatcaatctccgcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaatcctttggttg |
256 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
28936622 |
catgtttgaaaggaatatcttaccccatcagaatcaacctcagcattttcctcaattagaaatgcaagttttgagcagtgcccacaaaatcctttgtttc |
28936721 |
T |
|
| Q |
257 |
ttttgacagtagcaaattcagcatcatagaagcattttccacaaacagctattgggcaacagaagcacctaaacttcgatgctctaccgcaaaggtagca |
356 |
Q |
| |
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||||||| |||||||| ||||| | | | |||| ||||||||||||||| ||||||| || |||||| ||||||||| | ||||| ||| | |||||| |
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|
| T |
28936722 |
gtttgacattagcaaatacagcaccctggtagcaatttccacaaacagcttttgggcagcacaagcacataaacttcggttttctacggcatatgtagca |
28936821 |
T |
|
| Q |
357 |
aaaatgggaacc--tataaaattattcaaaagtcattcggcatc |
398 |
Q |
| |
|
| | |||||||| ||||||||||||||||| | |||| ||||| |
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|
| T |
28936822 |
atagtgggaacctatataaaattattcaaaatttattcagcatc |
28936865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 28926258 - 28926336
Alignment:
| Q |
24 |
gataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28926258 |
gataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa |
28926336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 28902608 - 28902686
Alignment:
| Q |
24 |
gataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa |
102 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
28902608 |
gataacttgataatattcaaaaaagtaactttctattgtatctggatctctcatatctaccttctcctgcaaatgaaaa |
28902686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 28935823 - 28935881
Alignment:
| Q |
44 |
aaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa |
102 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
28935823 |
aaaagtaactttcaaatgtatctggatctttcatatctatcttttcctgaaaatgaaaa |
28935881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 28892663 - 28892741
Alignment:
| Q |
24 |
gataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa |
102 |
Q |
| |
|
||||| ||||||||| || |||||||||||||| ||||||||||||| ||||||| | ||| ||||||||||||||| |
|
|
| T |
28892663 |
gataatttgataataatcaaaaaagtaactttcttgtgtatctggatctttcatatcgaccttttcctgcaaatgaaaa |
28892741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 496
Target Start/End: Original strand, 28917463 - 28917495
Alignment:
| Q |
464 |
gaatgaatttaatcacaacaacctacacaggtt |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
28917463 |
gaatgaatttaatcacaacaacctacacaggtt |
28917495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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