View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_26 (Length: 481)
Name: NF17203_low_26
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 21 - 466
Target Start/End: Complemental strand, 26577003 - 26576577
Alignment:
| Q |
21 |
actaaaaacaaatacaaattttctaaagcatagagatacaactcaaaaactacaacaagctagacacacctccccttccacaaaaggcgacatggtttta |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
26577003 |
actaaaaacaaatacaaattttctaaagcatagagatacaactcaaaaactaccacaagctagacacacctccccttcca-------------------a |
26576923 |
T |
|
| Q |
121 |
aatcatgttatctttatttattgcagttcatttataattctgcaatgccatttttattctcagcctgtgcaagaaatttgaatgttagagagaaaattag |
220 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26576922 |
aaccatgtcatctttatttattgcagttcatttataattctgcaatgccatttttattctcagcctgtgcaagaaatttgaatgttagagagaaaattag |
26576823 |
T |
|
| Q |
221 |
aatcatgcaaagaagtaatatgagtaacaactcgatgaaataaaagtataagtttaaaagtaacgaattgttgtgtcaacttactgttaagtacaagcac |
320 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
26576822 |
aatcatgcaaagaagtaatatgagtaacaactcgttgaaataaaagtataagtttaaaagtaacaaattgttgtgtcaacttactgttaagtacaaacac |
26576723 |
T |
|
| Q |
321 |
aattattaccaatgcatgtcagaacatgaggataggtacaactatccggacaacctggtttggtacaactaggtggacaatctctgtcgtaattacatcc |
420 |
Q |
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|||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||||| |
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| T |
26576722 |
aatttttaccaatgcatctcagaacatgaggataggcacaactatccggacaacctcgtgtggtacaactaggtggacaatctgtgtcgtcattacatcc |
26576623 |
T |
|
| Q |
421 |
gtaaaccgctgtaatgtaagccaaaaaattaagtaaatgaaaaggg |
466 |
Q |
| |
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| T |
26576622 |
gtaaaccgctgtaatgtaagccaaaaaattaagtaaatgaaaaggg |
26576577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 122 - 339
Target Start/End: Complemental strand, 26584826 - 26584609
Alignment:
| Q |
122 |
atcatgttatctttatttattgcagttcatttataattctgcaatgccatttttattctcagcctgtgcaagaaatttgaatgttagagagaaaattaga |
221 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||||||| |||||||||||||||| |||| |
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| T |
26584826 |
atcacgttatctttatttattgcagttcatttataattctgcaatgacacttttattctaagcctgacatggaaattttaatgttagagagaaaaataga |
26584727 |
T |
|
| Q |
222 |
atcatgcaaagaagtaatatgagtaacaactcgatgaaataaaagtataagtttaaaagtaacgaattgttgtgtcaacttactgttaagtacaagcaca |
321 |
Q |
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| ||||| |||||||||| | || |||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||| |||| ||||| ||| |
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| T |
26584726 |
aatgtgcaatgaagtaatataaatatcaactcattgaaataaaagtataagtttaaaagtaacaaatttttgtatcaacttacgattaaatacaaaaaca |
26584627 |
T |
|
| Q |
322 |
attattaccaatgcatgt |
339 |
Q |
| |
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||||||| |||||||||| |
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| T |
26584626 |
attattatcaatgcatgt |
26584609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 26571343 - 26571255
Alignment:
| Q |
128 |
ttatctttatttattgcagttcatttataattctgcaatgccatttttattctcagcctgtgcaagaaatttgaatgttagagagaaaa |
216 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| |||||||| |
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| T |
26571343 |
ttatcattatttattgcagttcatttataattctgcaatgatatttttattctcgacctgtccaagaaatttgaatgttaaagagaaaa |
26571255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 286 - 388
Target Start/End: Complemental strand, 26571222 - 26571120
Alignment:
| Q |
286 |
aattgttgtgtcaacttactgttaagtacaagcacaattattaccaatgcatgtcagaacatgaggataggtacaactatccggacaacctggtttggta |
385 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |||||| |||| ||| |||| |||| ||||| |||||| |||| |
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| T |
26571222 |
aattgttgtttcaacttactgttaagtacaaaaacaattattatcaatgcatgtcggaacatcaggaaaggaacaaatatctggacagcctggtaaggta |
26571123 |
T |
|
| Q |
386 |
caa |
388 |
Q |
| |
|
||| |
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|
| T |
26571122 |
caa |
26571120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 26584901 - 26584856
Alignment:
| Q |
23 |
taaaaacaaatacaaattttctaaagcatagagatacaactcaaaa |
68 |
Q |
| |
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||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
26584901 |
taaaaacaaatacaaatttgctaaagcagtgagatacaactcaaaa |
26584856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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