View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_low_27 (Length: 475)

Name: NF17203_low_27
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17203_low_27
NF17203_low_27
[»] chr4 (14 HSPs)
chr4 (56-242)||(4089801-4089993)
chr4 (290-353)||(44362664-44362727)
chr4 (297-352)||(37496703-37496758)
chr4 (300-345)||(13307883-13307928)
chr4 (299-356)||(18513248-18513305)
chr4 (307-358)||(34589721-34589772)
chr4 (297-351)||(13117429-13117483)
chr4 (297-351)||(14465299-14465353)
chr4 (310-352)||(28663491-28663533)
chr4 (299-333)||(45615422-45615456)
chr4 (298-335)||(683068-683105)
chr4 (299-335)||(9988706-9988742)
chr4 (299-335)||(22596987-22597023)
chr4 (297-337)||(40224503-40224543)
[»] scaffold0314 (1 HSPs)
scaffold0314 (292-346)||(8953-9007)
[»] chr6 (9 HSPs)
chr6 (300-352)||(10031569-10031621)
chr6 (297-352)||(19369816-19369871)
chr6 (297-346)||(6751887-6751936)
chr6 (297-335)||(10158000-10158038)
chr6 (298-351)||(5579654-5579707)
chr6 (305-358)||(1334654-1334707)
chr6 (309-346)||(29959180-29959217)
chr6 (299-335)||(7942271-7942307)
chr6 (299-335)||(9024183-9024219)
[»] chr1 (3 HSPs)
chr1 (297-351)||(14332409-14332462)
chr1 (299-350)||(40176604-40176655)
chr1 (297-333)||(31667443-31667479)
[»] chr2 (8 HSPs)
chr2 (297-350)||(43586010-43586063)
chr2 (299-351)||(18512149-18512201)
chr2 (297-352)||(45000851-45000905)
chr2 (298-347)||(13501084-13501133)
chr2 (301-358)||(39399905-39399962)
chr2 (299-350)||(18570973-18571024)
chr2 (297-348)||(33884054-33884105)
chr2 (297-350)||(14373432-14373485)
[»] chr7 (12 HSPs)
chr7 (299-350)||(5937428-5937479)
chr7 (297-352)||(38134411-38134466)
chr7 (297-351)||(1885573-1885627)
chr7 (300-358)||(35238192-35238250)
chr7 (299-344)||(2144546-2144591)
chr7 (300-345)||(48964070-48964115)
chr7 (301-341)||(2143862-2143902)
chr7 (297-356)||(25956442-25956499)
chr7 (300-335)||(44172898-44172933)
chr7 (297-350)||(22801746-22801799)
chr7 (300-345)||(28635178-28635223)
chr7 (299-335)||(37775998-37776034)
[»] chr8 (9 HSPs)
chr8 (297-351)||(24295142-24295196)
chr8 (300-350)||(27733848-27733898)
chr8 (298-351)||(26915246-26915299)
chr8 (299-351)||(42874522-42874574)
chr8 (298-341)||(31119097-31119140)
chr8 (292-351)||(31548293-31548352)
chr8 (298-351)||(34073984-34074037)
chr8 (299-331)||(1586628-1586660)
chr8 (297-333)||(32696382-32696418)
[»] chr5 (8 HSPs)
chr5 (305-351)||(30080514-30080560)
chr5 (299-349)||(38784808-38784858)
chr5 (298-335)||(10009842-10009879)
chr5 (297-344)||(10010561-10010608)
chr5 (290-352)||(19167574-19167637)
chr5 (298-348)||(26205766-26205816)
chr5 (65-154)||(42594443-42594532)
chr5 (319-351)||(309158-309190)
[»] chr3 (8 HSPs)
chr3 (297-351)||(49179720-49179774)
chr3 (290-346)||(14338481-14338537)
chr3 (285-335)||(20691335-20691385)
chr3 (297-335)||(44427857-44427895)
chr3 (299-335)||(9210832-9210868)
chr3 (302-334)||(34409352-34409384)
chr3 (305-345)||(42076762-42076802)
chr3 (294-346)||(52558130-52558182)
[»] scaffold0024 (1 HSPs)
scaffold0024 (308-351)||(18124-18167)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 4089801 - 4089993
Alignment:
Q  56 gttaggaacgatattgcaggaattgtgaaggaaaaggacttgaaatctcttctcgagtttggtggggttgacggtgtttgtgaagttcttcgtggtcaac 155  Q
    |||| ||| |||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||   | |||||||| ||||| ||||||   |    
T  4089801 gttacgaatgatattgctggaattgtgaaggagaaggacttgaagtctcttcttgagtttggtggggttggtagagtttgtgatgttctccgtggt---c 4089897  T
Q  156 aaattcatcactcatcatcacaggt-ataattctcttcaatatc----atggatgtttaatc----atataaatgctttcttggtttattaagtgt 242  Q
    ||||||||||||||||| || |||| ||||||||||| ||||||    |||||||||| |||    ||||||||||||||||||||||||||||||    
T  4089898 aaattcatcactcatcagcagaggtaataattctctttaatatcatcgatggatgtttgatcaaatatataaatgctttcttggtttattaagtgt 4089993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 353
Target Start/End: Complemental strand, 44362727 - 44362664
Alignment:
Q  290 tctgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcag 353  Q
    |||||| || |||| ||||||||| || |||||||||||||||||| |||||||||||||||||    
T  44362727 tctgacaccaacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgtcag 44362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 37496758 - 37496703
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 352  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||  ||||||||||||    
T  37496758 ccgacacttgtgattacattgaattatgtcattttctcaaaaaattatcggtgtca 37496703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 13307928 - 13307883
Alignment:
Q  300 acacatgtgattacgttgaattatgtcattttctcacaattttatc 345  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||    
T  13307928 acacttgtgattacattgaattatgtcattttctcaaaattttatc 13307883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 18513248 - 18513305
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgt 356  Q
    ||||||| ||||||| ||||||||||||||||||||| | | ||||||||||| ||||    
T  18513248 gacacatatgattacattgaattatgtcattttctcaaattattatcggtgtctgtgt 18513305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 34589721 - 34589772
Alignment:
Q  307 tgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 358  Q
    ||||||| ||||||||||||||||||||| | | |||||||||||| |||||    
T  34589721 tgattacattgaattatgtcattttctcaaattgttatcggtgtcaatgtgt 34589772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 13117483 - 13117429
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 351  Q
    ||||||| ||||||||| ||||||| ||||||||||||  |||||||| ||||||    
T  13117483 ccgacacttgtgattacattgaattttgtcattttctccaaattttattggtgtc 13117429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 351
Target Start/End: Original strand, 14465299 - 14465353
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 351  Q
    ||||||||| ||||||  ||||||||||||||||||||| | | |||||||||||    
T  14465299 ccgacacatatgattaaattgaattatgtcattttctcaaattattatcggtgtc 14465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 28663533 - 28663491
Alignment:
Q  310 ttacgttgaattatgtcattttctcacaattttatcggtgtca 352  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||    
T  28663533 ttacattgaattatgtcattttctcaaaattttatccgtgtca 28663491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 45615422 - 45615456
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcattttct 333  Q
    |||||||||||||||||| ||||||||||||||||    
T  45615422 gacacatgtgattacgttcaattatgtcattttct 45615456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 683105 - 683068
Alignment:
Q  298 cgacacatgtgattacgttgaattatgtcattttctca 335  Q
    |||||||||||||||| || ||||||||||||||||||    
T  683105 cgacacatgtgattacattcaattatgtcattttctca 683068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 9988706 - 9988742
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcattttctca 335  Q
    ||||||||||||||| || ||||||||||||||||||    
T  9988706 gacacatgtgattacattcaattatgtcattttctca 9988742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 22596987 - 22597023
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcattttctca 335  Q
    ||||||||||||||||||||||||||  |||||||||    
T  22596987 gacacatgtgattacgttgaattatgcaattttctca 22597023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 40224503 - 40224543
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcaca 337  Q
    ||||||||| ||||||| || ||||||||||||||||||||    
T  40224503 ccgacacatatgattacattaaattatgtcattttctcaca 40224543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 9007 - 8953
Alignment:
Q  292 tgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcg 346  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  9007 tgacaccgacacttgtgattacgttgaattatgtcattttctcaaaattttatcg 8953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 10031621 - 10031569
Alignment:
Q  300 acacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 352  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  10031621 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtca 10031569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 19369871 - 19369816
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 352  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  19369871 ccgacacttgtgattacattgaattatgtcattttctcaaaattttatccgtgtca 19369816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 6751887 - 6751936
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcg 346  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  6751887 ccgacacttgtgattacattgaattatgtcattttctcaaaattttatcg 6751936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 10158038 - 10158000
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctca 335  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  10158038 ccgacacatgtgattacattgaattatgtcattttctca 10158000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 5579707 - 5579654
Alignment:
Q  298 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 351  Q
    |||||| ||||| ||| ||||| ||||||||||||||| |||||||||||||||    
T  5579707 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcggtgtc 5579654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 1334707 - 1334654
Alignment:
Q  305 tgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 358  Q
    ||||||||| |||||||||||| |||| ||| ||||||||| |||||| |||||    
T  1334707 tgtgattacattgaattatgtccttttttcaaaattttatccgtgtcaatgtgt 1334654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 29959217 - 29959180
Alignment:
Q  309 attacgttgaattatgtcattttctcacaattttatcg 346  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  29959217 attacattgaattatgtcattttctcaaaattttatcg 29959180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 7942307 - 7942271
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcattttctca 335  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  7942307 gacacatgtgattacattgaattatgtcattgtctca 7942271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 9024183 - 9024219
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcattttctca 335  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  9024183 gacacatatgattacattgaattatgtcattttctca 9024219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 14332462 - 14332409
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 351  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  14332462 ccgacatatgtgattacattgaattatgtcattttctca-aattttatcggtgtc 14332409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 40176655 - 40176604
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 350  Q
    ||||||||||||||| |||||| | |||||||||||| ||||||||||||||    
T  40176655 gacacatgtgattacattgaatgaagtcattttctcaaaattttatcggtgt 40176604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 31667479 - 31667443
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttct 333  Q
    ||||||||||||||||| || ||||||||||||||||    
T  31667479 ccgacacatgtgattacatttaattatgtcattttct 31667443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 350
Target Start/End: Original strand, 43586010 - 43586063
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 350  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  43586010 ccgacacttgtgattacattgaattatgtcattttctcaaaattttatctgtgt 43586063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 18512149 - 18512201
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 351  Q
    ||||||||||||||| ||||||||| | ||||||||| |||||||||||||||    
T  18512149 gacacatgtgattacattgaattatattattttctcaaaattttatcggtgtc 18512201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 45000851 - 45000905
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 352  Q
    ||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  45000851 ccgacacatatgattacattgaattgtgtcattttctca-aattttatcggtgtca 45000905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 13501084 - 13501133
Alignment:
Q  298 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcgg 347  Q
    |||||| ||||||||| ||||||||||||||||||| | |||||||||||    
T  13501084 cgacacttgtgattacattgaattatgtcattttcttaaaattttatcgg 13501133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 39399962 - 39399905
Alignment:
Q  301 cacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 358  Q
    ||||||||| || |||||||||||||||||||| | ||||| |||||||||| |||||    
T  39399962 cacatgtgaataggttgaattatgtcattttctaaaaatttcatcggtgtcaatgtgt 39399905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 18571024 - 18570973
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 350  Q
    ||||||| ||||||| ||||||||||||||||||||| | | ||||||||||    
T  18571024 gacacatatgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 33884105 - 33884054
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggt 348  Q
    ||||||| ||| |||||  ||||| |||||||||||||||||||||||||||    
T  33884105 ccgacacttgtaattacactgaatcatgtcattttctcacaattttatcggt 33884054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Original strand, 14373432 - 14373485
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 350  Q
    ||||||||||||||||| |||||||||||||||   ||| |||||||| |||||    
T  14373432 ccgacacatgtgattacattgaattatgtcattgcgtcaaaattttattggtgt 14373485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 350
Target Start/End: Original strand, 5937428 - 5937479
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 350  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  5937428 gacacttgtgattacattgaattatgtcattttctcaaaattttatccgtgt 5937479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 38134411 - 38134466
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 352  Q
    ||||||||| ||||||| ||||||||||||||||||||| | | ||||||||||||    
T  38134411 ccgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtca 38134466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 1885627 - 1885573
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 351  Q
    ||||||| ||||||||| ||||||||||||||||| ||| ||||||||| |||||    
T  1885627 ccgacacttgtgattacattgaattatgtcattttttcaaaattttatccgtgtc 1885573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 358
Target Start/End: Original strand, 35238192 - 35238250
Alignment:
Q  300 acacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 358  Q
    |||| ||||||||  ||||||||||||||||||||| ||| |||||||||||| |||||    
T  35238192 acacgtgtgattatattgaattatgtcattttctcaaaatattatcggtgtcaatgtgt 35238250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 2144546 - 2144591
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcattttctcacaattttat 344  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  2144546 gacacgtgtgattacattgaattatgtcattttctcaaaattttat 2144591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 48964070 - 48964115
Alignment:
Q  300 acacatgtgattacgttgaattatgtcattttctcacaattttatc 345  Q
    |||| ||||||||  |||||||||||||||||||||||||||||||    
T  48964070 acacttgtgattaaattgaattatgtcattttctcacaattttatc 48964115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 2143862 - 2143902
Alignment:
Q  301 cacatgtgattacgttgaattatgtcattttctcacaattt 341  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  2143862 cacatgtgattacattgaattatgtcattttctcaaaattt 2143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 25956499 - 25956442
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgt 356  Q
    ||||||| ||||||||| ||||||||||||||||  ||||||||||||  ||||||||||    
T  25956499 ccgacacttgtgattacattgaattatgtcattt--tcacaattttatttgtgtcagtgt 25956442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 335
Target Start/End: Original strand, 44172898 - 44172933
Alignment:
Q  300 acacatgtgattacgttgaattatgtcattttctca 335  Q
    |||||||||||||| |||||||||||||||||||||    
T  44172898 acacatgtgattacattgaattatgtcattttctca 44172933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Original strand, 22801746 - 22801799
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 350  Q
    ||||||| |||||||||  |||||||||||||| ||||| ||||| ||||||||    
T  22801746 ccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgt 22801799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 28635178 - 28635223
Alignment:
Q  300 acacatgtgattacgttgaattatgtcattttctcacaattttatc 345  Q
    |||||||||||||||||||||| ||  ||||||||| |||||||||    
T  28635178 acacatgtgattacgttgaattgtgaaattttctcaaaattttatc 28635223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 37776034 - 37775998
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcattttctca 335  Q
    ||||||||||||||| || ||||||||||||||||||    
T  37776034 gacacatgtgattacatttaattatgtcattttctca 37775998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 351
Target Start/End: Original strand, 24295142 - 24295196
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 351  Q
    ||||||| ||||||||| || |||| |||||||||||||||||||||||| ||||    
T  24295142 ccgacacttgtgattacattaaattgtgtcattttctcacaattttatcgatgtc 24295196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 27733898 - 27733848
Alignment:
Q  300 acacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 350  Q
    |||| ||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  27733898 acacttgtgattacattgaattatatcattttctcaaaattttatcggtgt 27733848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 26915246 - 26915299
Alignment:
Q  298 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 351  Q
    |||||| ||||||||| || |||||||||||||||||| ||||||||| |||||    
T  26915246 cgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtc 26915299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 42874574 - 42874522
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 351  Q
    ||||| ||||||||| ||||||||||||||||||||| ||| ||| |||||||    
T  42874574 gacacttgtgattacattgaattatgtcattttctcaaaatgttaacggtgtc 42874522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 31119140 - 31119097
Alignment:
Q  298 cgacacatgtgattacgttgaattatgtcattttctcacaattt 341  Q
    |||||| ||||||||| ||||||||||||||||||||| |||||    
T  31119140 cgacacttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 351
Target Start/End: Original strand, 31548293 - 31548352
Alignment:
Q  292 tgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 351  Q
    |||| ||||||||||||||||| ||||||||||||||||| ||| |   |||||||||||    
T  31548293 tgacaccgacacatgtgattacattgaattatgtcattttatcaaataattatcggtgtc 31548352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 34073984 - 34074037
Alignment:
Q  298 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 351  Q
    |||||| | ||||||| || |||||||||||||| ||| |||||||||||||||    
T  34073984 cgacacttatgattacattaaattatgtcattttttcaaaattttatcggtgtc 34074037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 1586660 - 1586628
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcatttt 331  Q
    |||||||||||||||||| ||||||||||||||    
T  1586660 gacacatgtgattacgttcaattatgtcatttt 1586628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 32696418 - 32696382
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttct 333  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  32696418 ccgacacatgtgattatgttcaattatgtcattttct 32696382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 30080514 - 30080560
Alignment:
Q  305 tgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 351  Q
    ||||||||| ||||||||||||||||||||| ||||||||| |||||    
T  30080514 tgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 30080560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 38784858 - 38784808
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtg 349  Q
    ||||| ||||||||| ||||||||| ||||||| |||||||||||||||||    
T  38784858 gacacttgtgattacattgaattatatcattttttcacaattttatcggtg 38784808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 10009879 - 10009842
Alignment:
Q  298 cgacacatgtgattacgttgaattatgtcattttctca 335  Q
    |||||||||||||||| |||||||||||||||||||||    
T  10009879 cgacacatgtgattacattgaattatgtcattttctca 10009842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 344
Target Start/End: Complemental strand, 10010608 - 10010561
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttat 344  Q
    |||||||||||||||||  |||||||||||||||| ||| ||||||||    
T  10010608 ccgacacatgtgattacaatgaattatgtcattttttcaaaattttat 10010561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 19167574 - 19167637
Alignment:
Q  290 tctgacgccgacacatgtgattacgttgaattatgtcattttct-cacaattttatcggtgtca 352  Q
    |||||| ||||||| ||||||||| ||||||| ||||||||| | || ||||||||||||||||    
T  19167574 tctgacaccgacacttgtgattacattgaattgtgtcatttttttcaaaattttatcggtgtca 19167637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 26205766 - 26205816
Alignment:
Q  298 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggt 348  Q
    |||||| | |||||||  |||||||||||||||||||| ||||||||||||    
T  26205766 cgacacctatgattacactgaattatgtcattttctcaaaattttatcggt 26205816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 42594532 - 42594443
Alignment:
Q  65 gatattgcaggaattgtgaaggaaaaggacttgaaatctcttctcgagtttggtggggttgacggtgtttgtgaagttcttcgtggtcaa 154  Q
    |||||||| | |||||||||  | |||||||||||||||||||| ||| |||||||| ||| |   ||||||||  |||||| |||||||    
T  42594532 gatattgctgaaattgtgaaaaagaaggacttgaaatctcttcttgagcttggtgggattggcatagtttgtgattttcttcatggtcaa 42594443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 351
Target Start/End: Complemental strand, 309190 - 309158
Alignment:
Q  319 attatgtcattttctcacaattttatcggtgtc 351  Q
    ||||||||||||||||| |||||||||||||||    
T  309190 attatgtcattttctcaaaattttatcggtgtc 309158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 351
Target Start/End: Original strand, 49179720 - 49179774
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 351  Q
    ||||||| ||||||||| | ||||||||||| ||||||| |||||||||||||||    
T  49179720 ccgacacttgtgattacatcgaattatgtcactttctcaaaattttatcggtgtc 49179774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 14338481 - 14338537
Alignment:
Q  290 tctgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcg 346  Q
    |||||| ||||||  ||||||||| ||||||||||||||||| ||| ||||||||||    
T  14338481 tctgacaccgacatttgtgattacattgaattatgtcattttttcaaaattttatcg 14338537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 20691385 - 20691335
Alignment:
Q  285 gtgtctctgacgccgacacatgtgattacgttgaattatgtcattttctca 335  Q
    |||| |||||| ||||||||| |||||||  ||||||||||||||||||||    
T  20691385 gtgtgtctgacaccgacacatatgattacactgaattatgtcattttctca 20691335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 335
Target Start/End: Complemental strand, 44427895 - 44427857
Alignment:
Q  297 ccgacacatgtgattacgttgaattatgtcattttctca 335  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  44427895 ccgacacatgtgattacattggattatgtcattttctca 44427857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 9210832 - 9210868
Alignment:
Q  299 gacacatgtgattacgttgaattatgtcattttctca 335  Q
    ||||||||||||| | |||||||||||||||||||||    
T  9210832 gacacatgtgattccattgaattatgtcattttctca 9210868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 34409352 - 34409384
Alignment:
Q  302 acatgtgattacgttgaattatgtcattttctc 334  Q
    |||||||||||| ||||||||||||||||||||    
T  34409352 acatgtgattacattgaattatgtcattttctc 34409384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 42076762 - 42076802
Alignment:
Q  305 tgtgattacgttgaattatgtcattttctcacaattttatc 345  Q
    ||||||||| |||||||| ||||||||| ||||||||||||    
T  42076762 tgtgattacattgaattaggtcattttcccacaattttatc 42076802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 52558130 - 52558182
Alignment:
Q  294 acgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcg 346  Q
    ||||| || ||||||||||| |||||||||||| |||||||| | ||||||||    
T  52558130 acgcccacgcatgtgattacattgaattatgtccttttctcaaatttttatcg 52558182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 351
Target Start/End: Original strand, 18124 - 18167
Alignment:
Q  308 gattacgttgaattatgtcattttctcacaattttatcggtgtc 351  Q
    |||||| ||||||||||| ||||||||| |||||||||||||||    
T  18124 gattacattgaattatgttattttctcaaaattttatcggtgtc 18167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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