View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_30 (Length: 467)
Name: NF17203_low_30
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 454
Target Start/End: Original strand, 7071223 - 7071667
Alignment:
| Q |
14 |
gaagcaacggattcacatggaagctgaaatacccagaaagaaagagtgaaagaacaacttctagaaattattttaggaaatatggaggagctcgagaatc |
113 |
Q |
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| T |
7071223 |
gaagcaacggattcacatggaagctgaaatacccagaaagaaagagtgaaagaacaacttctagaaattattttaggaaatatggaggagctcgagaatc |
7071322 |
T |
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| Q |
114 |
aaattaa---------ttaaatcaattattgttgaactaagagattnnnnnnnncctagtaactagacttacacaatataaatttaaagaagtatgtagt |
204 |
Q |
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| T |
7071323 |
aaattaaattaattaattaactcaattatagttgaactaagagattaaaaaaaacctagtaactagacttacacaatataaatttgaagaagtatgtaat |
7071422 |
T |
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| Q |
205 |
ttaagaattcgaaccacgac-cctgcattgtaatgtccataaaactacaagttgaattacaattacacttatgcacaaaacacactcatttgttacttaa |
303 |
Q |
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| T |
7071423 |
ttaagaattcgaaccacgactcctgcattgtaatgtccataaaactataagttgaatt------acacttatgcacaaaacacactcatttgttacttaa |
7071516 |
T |
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| Q |
304 |
ttcacatttatgagcatataccacaatttggactctaaggggtaaattgaataaactagagcgtctaaaatgatagataaatttgatttggatacttaaa |
403 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
7071517 |
ttcacatttatgagcatataccacaatttggactccgaggggtatattgaataaactagagcgtctaaaatgattgataaatttaatttggatacttaaa |
7071616 |
T |
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| Q |
404 |
tcacatttatgaagcatatactaagtttaaaaaatcaattaccatattttt |
454 |
Q |
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| T |
7071617 |
tcacatttatgaaacatatactaagttaaaaaaatcaattaccatattttt |
7071667 |
T |
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