View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_31 (Length: 467)
Name: NF17203_low_31
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 132 - 455
Target Start/End: Original strand, 40286789 - 40287112
Alignment:
| Q |
132 |
aggtagataagtgtgttatctagctggtgcttagttggaaagtaaagccatgtcaggaacaaaattggcttattatgggtgatgtatgtatgaatgagtg |
231 |
Q |
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| T |
40286789 |
aggtagataagtgtgttatctagctggtgcttagttggaaagtaaagccatgtcaggaacaaaattggcttattatgggtgatgtatgtatgaatgagtg |
40286888 |
T |
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| Q |
232 |
gtgaacatttgctcttggaaggtaactatctatccaatcatcatcatcatgctaatgcacattttcaatgcacatatgtgcaattaccttttttcaaaga |
331 |
Q |
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| T |
40286889 |
gtgaacatttgctcttggaaggtaactatctatccaatcatcatcatcatgctaatgcacattttcaatgcacatatgtgcaattaccttttttcaaaga |
40286988 |
T |
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| Q |
332 |
tatagattaagaaaattaatttacgaacaaataaatgtaacaattttataaagtcatctttaataggtattgactattaataattctaatattctacaac |
431 |
Q |
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| T |
40286989 |
tatagattaagaaaattaatttatgaacaaataaatgtaacaattttataaagtcatctttaatagctattgactattaataattctaatattctacaac |
40287088 |
T |
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| Q |
432 |
tagtgaggttcctttcatattcat |
455 |
Q |
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| T |
40287089 |
tagtgaggttcctttcatattcat |
40287112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 40286666 - 40286763
Alignment:
| Q |
15 |
ttgaaaggtaagagaggtggctgaaagagaggccattgtattgaatcttaggaagaagatagaatagtaagagatatggattgggttgatgaaacggt |
112 |
Q |
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| T |
40286666 |
ttgaaaggtaagagaggtggctgaaagagaggccattgtattgaagcttaggaagaagatagaatagtaagagatatggattgggttgatgaaacggt |
40286763 |
T |
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