View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_33 (Length: 459)
Name: NF17203_low_33
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Complemental strand, 29339488 - 29339053
Alignment:
| Q |
8 |
cgaagaatataaactacgatctgaaattatgttcatacagaaaatttcttcatccaaatacactaaaaaagttttaannnnnnnataacatgcctgaatt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29339488 |
cgaagaatataaactacgatctgaaattatgttcatacagaaaatttcttcatccaaatacactaaaaaagttttaatttttttataacatgcctgaatt |
29339389 |
T |
|
| Q |
108 |
gttttaacagcaggcttgttgatccgttgaagatgggatgtaatcatcgtcttgttcaacttgtgaaattcgttctctcctagaaaagcttgattgttca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29339388 |
gttttaacagcaggcttgttgatccgttgaagatgggatgtaatcatcgtcttgttcaacttgtgaaattcgttctctcctagaaaagcttgattgttca |
29339289 |
T |
|
| Q |
208 |
gttgattgtggcaggaatgaataggataaacaaaagacacaatgagaaaaacatgtaggaggagggagctaaagtccatatttgttttcgtgtgtttaga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29339288 |
gttgattgtggcaggaatgaataggataaacaaaagacacaatgagaaaaacatgtaggaggagggagctaaagtccatatttgttttcgtgtgtttaga |
29339189 |
T |
|
| Q |
308 |
ttttggttttgtgcatgaaaacaaatgtaaccccgtatccatcaaacacaaatatgcatatatgaatggtattgtaagccttaattacttttaacaacct |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29339188 |
ttttggttttgtgcatgaaaacaaatgtaaccccgtatccatcaaacacaaatatgc--atatgaatggtattgtaagccttaattacttttaaaaacct |
29339091 |
T |
|
| Q |
408 |
agaaaacttttgtgtacttatattgatatataaacatg |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
29339090 |
agaaaacttttgtgtacttatattgatatataaacatg |
29339053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 349
Target Start/End: Complemental strand, 29316851 - 29316516
Alignment:
| Q |
8 |
cgaagaatataaactacgatctgaaattatgttcatacagaaaatttcttcatccaaatacactaaaaaagttttaannnnnnnataacatgcctgaatt |
107 |
Q |
| |
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||||||| ||||| ||||||||||||||| |||| || || |||||||||||||||||||||||||| |||| | ||||||||||||||| |
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| T |
29316851 |
cgaagaaattaaaccacgatctgaaattatattca--caaaatatttcttcatccaaatacactaaaaatgtttgatttttttt-taacatgcctgaatt |
29316755 |
T |
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| Q |
108 |
gttttaacagcaggcttgttgatccgttgaagatgggatgtaatcatcgtcttgttcaacttgtgaaattcgttctctcctagaaaagcttgattgttca |
207 |
Q |
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|| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| || | |||| |||||||||||||||||||||||||| |
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| T |
29316754 |
gtcttaacagcaggcttgttgatccgttgaagaaaggatgtaatcatcatcttgttcaactttggagactcgtcctctcctagaaaagcttgattgttca |
29316655 |
T |
|
| Q |
208 |
gttgattgtggcaggaatgaataggataaacaaaagacacaatgagaaaaacatgtaggaggagggagctaaagtccatatttgttttcgtgtgtttaga |
307 |
Q |
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|||| |||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29316654 |
gttggttgttgcaggaa---ataggatcaacaaaagacacaatgagaaaaacatgtaggaggagggagctaaagtccatatttgttttcgtgtatttaga |
29316558 |
T |
|
| Q |
308 |
ttttggttttgtgcatgaaaacaaatgtaaccccgtatccat |
349 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
29316557 |
ttttggttttgtgcatggaaacaaatgtaacctcgtatccat |
29316516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 29310392 - 29310344
Alignment:
| Q |
92 |
ataacatgcctgaattgttttaacagcaggcttgttgatccgttgaaga |
140 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29310392 |
ataacatgcctgaattgttttaacagcaggcttgttgatctcttgaaga |
29310344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 384
Target Start/End: Complemental strand, 29356551 - 29356447
Alignment:
| Q |
278 |
aaagtccatatttgttttcgtgtgtttagattttggttttgtgcatgaaaacaaatgtaaccccgtatccatcaaacacaaatatgcatatatgaatggt |
377 |
Q |
| |
|
||||||||| |||||||| |||| |||||||||||||||||| ||| ||||||| ||||||| | || ||| |||| ||||||| ||||||| ||| |
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| T |
29356551 |
aaagtccatttttgtttttgtgttcttagattttggttttgtgaatgcaaacaaacctaaccccatgtcaatccaacataaatatg--tatatgacgggt |
29356454 |
T |
|
| Q |
378 |
attgtaa |
384 |
Q |
| |
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||||||| |
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|
| T |
29356453 |
attgtaa |
29356447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 340
Target Start/End: Complemental strand, 29244610 - 29244542
Alignment:
| Q |
272 |
ggagctaaagtccatatttgttttcgtgtgtttagattttggttttgtgcatgaaaacaaatgtaaccc |
340 |
Q |
| |
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||||||||||||||| || |||| |||| | |||||||||||||||||| || |||||||| |||||| |
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| T |
29244610 |
ggagctaaagtccattttcttttttgtgtttctagattttggttttgtgcgtggaaacaaatctaaccc |
29244542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 29310195 - 29310134
Alignment:
| Q |
271 |
gggagctaaagtccatatttgttttcgtgtgtttagattttggttttgtgcatgaaaacaaat |
333 |
Q |
| |
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|||||||||||||||| |||||||| |||| ||||||||| || ||||||||| |||||||| |
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| T |
29310195 |
gggagctaaagtccatgtttgtttt-gtgttcttagatttttgtgttgtgcatggaaacaaat |
29310134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 29356758 - 29356712
Alignment:
| Q |
94 |
aacatgcctgaattgttttaacagcaggcttgttgatccgttgaaga |
140 |
Q |
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|
|||||||||||||||| |||||||||||||| |||| | |||||||| |
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| T |
29356758 |
aacatgcctgaattgtcttaacagcaggcttattgagctgttgaaga |
29356712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 29215457 - 29215506
Alignment:
| Q |
93 |
taacatgcctgaattgttttaacagcaggcttgttgatccgttgaagatg |
142 |
Q |
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|||||| |||||||||| |||||| ||||||||||||| ||| ||||||| |
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| T |
29215457 |
taacatacctgaattgtcttaacaccaggcttgttgattcgtcgaagatg |
29215506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 341
Target Start/End: Complemental strand, 29284670 - 29284601
Alignment:
| Q |
272 |
ggagctaaagtccatatttgttttcgtgtgtttagattttggttttgtgcatgaaaacaaatgtaacccc |
341 |
Q |
| |
|
||||||||||||||| || ||| |||| | |||||||||||||||||| || |||||||| ||||||| |
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|
| T |
29284670 |
ggagctaaagtccattttcttttatgtgtttctagattttggttttgtgcgtggaaacaaatctaacccc |
29284601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 29362902 - 29362857
Alignment:
| Q |
305 |
agattttggttttgtgcatgaaaacaaatgtaaccccgtatccatc |
350 |
Q |
| |
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||||||| |||||||||||| |||||||| ||||||| |||||||| |
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| T |
29362902 |
agatttttgttttgtgcatgtaaacaaatctaaccccatatccatc |
29362857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 30910633 - 30910680
Alignment:
| Q |
93 |
taacatgcctgaattgttttaacagcaggcttgttgatccgttgaaga |
140 |
Q |
| |
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|||||| | |||||||| ||||||||||||||||||||| |||||||| |
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| T |
30910633 |
taacatacttgaattgtcttaacagcaggcttgttgatctgttgaaga |
30910680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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