View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_low_35 (Length: 450)

Name: NF17203_low_35
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17203_low_35
NF17203_low_35
[»] chr1 (22 HSPs)
chr1 (159-432)||(25987477-25987750)
chr1 (150-432)||(48378802-48379101)
chr1 (1-131)||(25987812-25987939)
chr1 (150-401)||(11894404-11894671)
chr1 (245-432)||(47140900-47141087)
chr1 (159-250)||(29677337-29677428)
chr1 (159-295)||(31584965-31585117)
chr1 (356-432)||(36728688-36728764)
chr1 (351-432)||(29678249-29678330)
chr1 (150-250)||(25293768-25293868)
chr1 (245-295)||(17562620-17562670)
chr1 (386-432)||(17562751-17562797)
chr1 (386-432)||(31585198-31585244)
chr1 (160-250)||(2191518-2191608)
chr1 (343-409)||(2191740-2191807)
chr1 (245-286)||(38264156-38264197)
chr1 (298-357)||(31292662-31292721)
chr1 (150-217)||(47141131-47141198)
chr1 (180-250)||(38264075-38264145)
chr1 (249-286)||(2191623-2191660)
chr1 (160-217)||(15379086-15379143)
chr1 (246-295)||(29677435-29677484)
[»] chr5 (14 HSPs)
chr5 (150-432)||(39206851-39207133)
chr5 (245-432)||(42837623-42837810)
chr5 (152-432)||(23429348-23429645)
chr5 (150-432)||(35188342-35188609)
chr5 (167-398)||(33742451-33742681)
chr5 (245-432)||(3926308-3926495)
chr5 (160-382)||(42878679-42878916)
chr5 (150-277)||(40057136-40057263)
chr5 (150-240)||(39800163-39800253)
chr5 (150-250)||(3926506-3926606)
chr5 (150-250)||(42837821-42837920)
chr5 (340-418)||(2209658-2209737)
chr5 (153-250)||(39886978-39887075)
chr5 (356-432)||(26621466-26621542)
[»] chr2 (11 HSPs)
chr2 (150-432)||(5110322-5110620)
chr2 (150-429)||(13626031-13626326)
chr2 (159-432)||(5704717-5705000)
chr2 (245-430)||(13807661-13807846)
chr2 (153-432)||(31575662-31575957)
chr2 (167-432)||(45150974-45151254)
chr2 (159-250)||(5938989-5939080)
chr2 (159-277)||(42622396-42622514)
chr2 (366-432)||(5938842-5938908)
chr2 (245-311)||(5938912-5938978)
chr2 (189-250)||(13807857-13807918)
[»] chr4 (25 HSPs)
chr4 (160-432)||(38951736-38952024)
chr4 (159-432)||(19841844-19842133)
chr4 (150-277)||(40568655-40568782)
chr4 (300-432)||(22278428-22278560)
chr4 (316-432)||(41039449-41039564)
chr4 (150-250)||(41041750-41041850)
chr4 (167-250)||(22279315-22279397)
chr4 (350-432)||(23626954-23627037)
chr4 (245-295)||(43624597-43624647)
chr4 (340-432)||(17120231-17120323)
chr4 (159-240)||(29117328-29117409)
chr4 (372-432)||(40714806-40714867)
chr4 (347-423)||(51357292-51357369)
chr4 (248-331)||(40714653-40714736)
chr4 (347-432)||(42555427-42555513)
chr4 (150-250)||(36464519-36464619)
chr4 (340-409)||(33340712-33340782)
chr4 (347-423)||(8819241-8819318)
chr4 (347-417)||(36464760-36464831)
chr4 (150-236)||(42555663-42555749)
chr4 (189-230)||(43624675-43624716)
chr4 (245-286)||(51357458-51357499)
chr4 (150-250)||(8819009-8819109)
chr4 (193-237)||(17120044-17120088)
chr4 (161-201)||(44853981-44854021)
[»] chr6 (14 HSPs)
chr6 (150-432)||(10788590-10788887)
chr6 (245-432)||(8576864-8577039)
chr6 (150-250)||(7622614-7622714)
chr6 (150-239)||(641748-641837)
chr6 (351-432)||(641971-642053)
chr6 (150-248)||(28582478-28582576)
chr6 (317-409)||(35167186-35167279)
chr6 (373-432)||(7622473-7622531)
chr6 (347-432)||(28582254-28582340)
chr6 (150-240)||(35167005-35167095)
chr6 (387-434)||(17930223-17930270)
chr6 (245-307)||(7622541-7622603)
chr6 (177-249)||(8577051-8577123)
chr6 (245-295)||(10408771-10408821)
[»] chr3 (15 HSPs)
chr3 (150-432)||(25874420-25874719)
chr3 (150-432)||(27926352-27926648)
chr3 (150-432)||(5295322-5295625)
chr3 (150-432)||(21288211-21288503)
chr3 (150-323)||(3778696-3778884)
chr3 (245-331)||(13826266-13826352)
chr3 (369-432)||(13826022-13826085)
chr3 (150-250)||(12149296-12149396)
chr3 (336-432)||(48251431-48251529)
chr3 (343-431)||(36584488-36584577)
chr3 (167-217)||(13826396-13826446)
chr3 (160-240)||(48251216-48251296)
chr3 (392-429)||(3778883-3778920)
chr3 (182-250)||(36585036-36585104)
chr3 (247-291)||(48251319-48251363)
[»] chr8 (15 HSPs)
chr8 (245-432)||(11481531-11481718)
chr8 (159-432)||(8226968-8227260)
chr8 (150-432)||(9762645-9762943)
chr8 (150-432)||(7986921-7987219)
chr8 (147-250)||(7968177-7968280)
chr8 (150-250)||(36582650-36582750)
chr8 (335-432)||(7968350-7968447)
chr8 (342-409)||(36582829-36582896)
chr8 (160-250)||(28211643-28211733)
chr8 (150-240)||(31006354-31006444)
chr8 (342-432)||(6870554-6870645)
chr8 (152-240)||(6870321-6870409)
chr8 (347-409)||(31006144-31006207)
chr8 (317-432)||(13355917-13356031)
chr8 (248-288)||(7968294-7968334)
[»] chr7 (25 HSPs)
chr7 (162-432)||(23809405-23809691)
chr7 (159-409)||(38440138-38440404)
chr7 (159-398)||(5973136-5973391)
chr7 (159-432)||(11038913-11039202)
chr7 (150-277)||(27337282-27337409)
chr7 (358-432)||(25502245-25502319)
chr7 (150-422)||(30541205-30541492)
chr7 (150-250)||(33189630-33189730)
chr7 (150-240)||(36299124-36299214)
chr7 (160-247)||(7767309-7767396)
chr7 (347-423)||(36298898-36298975)
chr7 (150-240)||(1052778-1052868)
chr7 (347-432)||(31457378-31457464)
chr7 (348-432)||(22519130-22519215)
chr7 (375-432)||(28636481-28636538)
chr7 (389-432)||(5973075-5973118)
chr7 (159-240)||(47925156-47925237)
chr7 (178-250)||(2943798-2943869)
chr7 (245-286)||(1052892-1052933)
chr7 (347-423)||(1053018-1053095)
chr7 (250-291)||(7767249-7767290)
chr7 (245-286)||(15953904-15953945)
chr7 (348-432)||(15954019-15954104)
chr7 (247-279)||(2943882-2943914)
chr7 (207-247)||(25502407-25502447)
[»] scaffold0155 (2 HSPs)
scaffold0155 (158-291)||(6672-6821)
scaffold0155 (348-432)||(6820-6904)
[»] scaffold0115 (1 HSPs)
scaffold0115 (150-250)||(22286-22386)
[»] scaffold0634 (1 HSPs)
scaffold0634 (150-250)||(8989-9089)
[»] scaffold0057 (1 HSPs)
scaffold0057 (357-423)||(66639-66706)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 159 - 432
Target Start/End: Complemental strand, 25987750 - 25987477
Alignment:
Q  159 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgctattaaac 258  Q
    ||||||| ||||| ||| |||||||||||  |||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||    
T  25987750 cttaatggatatctatggataaaataaatgaattttttaactacccgctaattaatggatacaaatgtggatttaatggtatccacacccgctattaaac 25987651  T
Q  259 cgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgctcttttaaaagaaag 358  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||     
T  25987650 cgattaaattacataaatatcctcaatatcattcaacattctaagaaaacaccctagatattgtgagtgttatcagttattacgctcttttaaaagaaaa 25987551  T
Q  359 tgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25987550 tgaaaatggttgggattgatgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 25987477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 150 - 432
Target Start/End: Original strand, 48378802 - 48379101
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| ||||    
T  48378802 agcggatagcttaatgaatatccatggataaaataaacggattttttaactacccgctaattaatggatacatatgcggatttaatgatattcacgcccg 48378901  T
Q  250 c----------------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatat--tgtgagtgttat 331  Q
    |                |||||||| || ||| |||||| |||||||||||||||||||||| |  ||||||||||||||| ||||  ||||||||||||    
T  48378902 cggacatccataccctctattaaactgagtaagttacatcaataacctcaatatcattcaacttcctaagaaaacaccctagatatattgtgagtgttat 48379001  T
Q  332 caattatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgt 431  Q
    || |||| |||||| |||||||| || ||||| ||||||||||||||||||||| || |||| || |||||||||||| | | |||||||||||||||||    
T  48379002 cagttattacgctcctttaaaaggaaatgaaagtggttgggattgttgaagcaaaagttttgcttatgttgaatatgatg-gttttacttatgtttttgt 48379100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 25987939 - 25987812
Alignment:
Q  1 gcataaaaggcaatctcacacttaaaa-tattcacaactaaaatactaatttgactacagcaatatcttaaataattagtaagaagtaacaaaaacattg 99  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||   |||||||||||||||||| |||||||||||||||||||    
T  25987939 gcataaaaggcaatctcacacttaaaaatattcacaactaaa-tactaatttgactaca---atatcttaaataattagtcagaagtaacaaaaacattg 25987844  T
Q  100 caacacaacttagacccataattagggatggc 131  Q
    |||||||||||||||||||||||| |||||||    
T  25987843 caacacaacttagacccataattatggatggc 25987812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 150 - 401
Target Start/End: Complemental strand, 11894671 - 11894404
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||| ||| |||||||||||  |||||||||||||| ||||||||||||| |   |||||||||||| ||||| ||||||||    
T  11894671 agcggataccttaatggatatcaatggataaaataaatgaattttttaactacctgctaattaatggatatggatgcggatttaacggtatccacacccg 11894572  T
Q  250 ----------------ctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 333  Q
                    |||||||||||| ||||||||||||||||||| ||||||||||||| |  ||| |||| ||| ||  |||||||||||||||      
T  11894571 tggatatccataccgactattaaaccgagtaaattacataaataaccttaatatcattcaacttcctaaaaaaaaaccttatgtattgtgagtgttattt 11894472  T
Q  334 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgtt 401  Q
     |||| || |||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||    
T  11894471 gttattacactcttttaaaaggaagtgaaagtggttgggattgttgatgcaagagctttgtttttgtt 11894404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 245 - 432
Target Start/End: Complemental strand, 47141087 - 47140900
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgct 344  Q
    ||||||||||||| ||| ||||||| |||||||| || |||| |||||||| |  |||||||| |||||   ||||||||||||||| | |||| |||||    
T  47141087 acccgctattaaatcgagtaaattaaataaataatcttaataccattcaacttcctaagaaaaaaccctcg-tattgtgagtgttattagttattacgct 47140989  T
Q  345 cttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatga-cgagctttacttatgtttttgtt 432  Q
    ||||||| || |||||||||| ||||||||||||||  ||||| |||||||||||||||||||||  ||| |||||||||| |||||||    
T  47140988 cttttaataggaagtgaaaatagttgggattgttgacccaagaactttgtttttgttgaatatgatggagttttacttatgcttttgtt 47140900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 29677337 - 29677428
Alignment:
Q  159 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 250  Q
    ||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||||||| ||  |||||||||||||||||| |||||||||    
T  29677337 cttaatggatatccatggataaaataaatggattttttaactacccgcaaattaatggatacggatgcggatttaatggtatccacacccgc 29677428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 159 - 295
Target Start/End: Original strand, 31584965 - 31585117
Alignment:
Q  159 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcac-------------- 244  Q
    ||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||| ||  |||||||||||||| ||| |||                  
T  31584965 cttaatggatatccatggataaaataaatgggttttttaactacccgctaattaatggatacggatgcggatttaatgatatccacacccgcggatatcc 31585064  T
Q  245 --acccgctattaaaccgattaaattacataaataacctcaatatcattcaac 295  Q
      ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31585065 atacccgctattaaaccgattaaattacataaataacatcaatatcattcaac 31585117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 356 - 432
Target Start/End: Original strand, 36728688 - 36728764
Alignment:
Q  356 aagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||| | ||||||||||    
T  36728688 aagtgaaagtggttgggattgttgaagcaagagctttgtttttgttgaatatgatgaactttacatgtgtttttgtt 36728764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 432
Target Start/End: Original strand, 29678249 - 29678330
Alignment:
Q  351 aaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||| |||||||| ||||| ||||||||||||||||||  ||||||||||||||||||| |||||||||||||  |||||||    
T  29678249 aaaggaagtgaaagtggttaggattgttgaagcaagagtcttgtttttgttgaatatgatgagctttacttatacttttgtt 29678330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 25293768 - 25293868
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| |||||||   ||||||||||| ||| ||||||||||||||||||||||||| ||  |||||||||||||||||| | ||||||    
T  25293768 agcggataccttaatggatatccacagataaaataaatggatattttaactacccgctaattaatggatacggatgcggatttaatggtatccgcacccg 25293867  T
Q  250 c 250  Q
    |    
T  25293868 c 25293868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 17562620 - 17562670
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaatatcattcaac 295  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17562620 acccgctattaaaccgattaaattacataaataacatcaatatcattcaac 17562670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 17562751 - 17562797
Alignment:
Q  386 gagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  17562751 gagctttgtttttgttgaatatgatgagctttacttatgtttttgtt 17562797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 31585198 - 31585244
Alignment:
Q  386 gagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  31585198 gagctttgtttttgttgaatatgatgagctttacttatgtttttgtt 31585244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 2191518 - 2191608
Alignment:
Q  160 ttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 250  Q
    |||||| ||||||||| ||||||||||  ||| ||||| ||||| | ||||||||||| ||| |||| ||||||||||||| | |||||||    
T  2191518 ttaatggatatccatggataaaataaacggatattttatctacctgttaattaatggatacagatgcagatttaatggtatccgcacccgc 2191608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 409
Target Start/End: Original strand, 2191740 - 2191807
Alignment:
Q  343 ctcttttaaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatga 409  Q
    |||||||| |||  ||||||| |||| ||||||||||||||||| || ||||||||||||||||||||    
T  2191740 ctcttttagaaggtagtgaaagtggtcgggattgttgaagcaagaagttttgtttttgttgaatatga 2191807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 38264156 - 38264197
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaata 286  Q
    ||||||||||||||| ||||||||||||||||||||| ||||    
T  38264156 acccgctattaaaccaattaaattacataaataaccttaata 38264197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 31292662 - 31292721
Alignment:
Q  298 tataagaaaacaccctaaatattgtgagtgttatcaattatcacgctcttttaaaagaaa 357  Q
    |||||||||||||| ||| ||||||||||||||| | |||| |||||| ||| |||||||    
T  31292662 tataagaaaacaccataagtattgtgagtgttattagttattacgctcctttgaaagaaa 31292721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 47141198 - 47141131
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatgga 217  Q
    |||||||  ||||||| ||||||||| |||||||||   |||||||| |||||||| |||||||||||    
T  47141198 agcggataccttaatggatatccatggataaaataagcggatttttttactacccgttaattaatgga 47141131  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 38264075 - 38264145
Alignment:
Q  180 aaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 250  Q
    |||||||| ||| ||||||||||||||||||||||||| |   ||| | |||||||||||| | |||||||    
T  38264075 aaataaatggatattttaactacccgctaattaatggatatggatgtgaatttaatggtatccgcacccgc 38264145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 2191623 - 2191660
Alignment:
Q  249 gctattaaaccgattaaattacataaataacctcaata 286  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  2191623 gctattaaaccgaataaattacataaataaccttaata 2191660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 15379143 - 15379086
Alignment:
Q  160 ttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatgga 217  Q
    |||||| ||||||||| || |||||||  ||| |||||||| ||||||||||||||||    
T  15379143 ttaatggatatccatggatcaaataaacggatattttaactgcccgctaattaatgga 15379086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 29677435 - 29677484
Alignment:
Q  246 cccgctattaaaccgattaaattacataaataacctcaatatcattcaac 295  Q
    ||||||||||||||   ||||||||||||||||| | |||||||||||||    
T  29677435 cccgctattaaaccaggtaaattacataaataactttaatatcattcaac 29677484  T

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Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 150 - 432
Target Start/End: Original strand, 39206851 - 39207133
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||| ||| ||||||||||  ||||||||||||||||||||||||||||| ||  |||||||||||||||||| ||||||||    
T  39206851 agcggataccttaatggatatcgatggataaaataaacggattttttaactacccgctaattaatggatacggatgcggatttaatggtatccacacccg 39206950  T
Q  250 ctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgctctttt 349  Q
    |||||||||||| |||||||||||||||| |||||||||||||||| |  |||||||||||||||  ||||||||||||||||| |||| || ||| |||    
T  39206951 ctattaaaccgagtaaattacataaataatctcaatatcattcaacttcctaagaaaacaccctaggtattgtgagtgttatcagttattacactccttt 39207050  T
Q  350 aaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||||| ||||| || |||||||||||||||||| |||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  39207051 aaaaggaagtggaagtggttgggattgttgaagtaagagctttgtttttgttgaatatgatgagttgtacttatgtttttgtt 39207133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 245 - 432
Target Start/End: Complemental strand, 42837810 - 42837623
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgct 344  Q
    ||||||||||||||||| |||||||||||||||| ||| |||||||||||| || ||||||||||||||| ||||| |||||||||||| |||| |||||    
T  42837810 acccgctattaaaccgagtaaattacataaataatctccatatcattcaactttctaagaaaacaccctagatattatgagtgttatcagttattacgct 42837711  T
Q  345 cttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    | |||||||| |||||||| ||||||||||||||||||||| | |||||||| |||||||||||| ||||||||||||||||||||||    
T  42837710 cctttaaaaggaagtgaaagtggttgggattgttgaagcaaaaactttgtttatgttgaatatgatgagctttacttatgtttttgtt 42837623  T

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Target: chr5; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 152 - 432
Target Start/End: Complemental strand, 23429645 - 23429348
Alignment:
Q  152 cggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacac----- 246  Q
    ||||| |||||||| |||||||||||||| |||||  |||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||         
T  23429645 cggatatcttaatggatatccatgaataacataaacggattttttaactactcgctaattaatggatacagatgcggatttaatggtattcacacccgca 23429546  T
Q  247 -----ccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcac 341  Q
         |||||||||||| || ||||||||||||||||||||| ||||||||||| |  ||||||||| |||||| ||||||||| ||||||| |||| ||    
T  23429545 tttacccgctattaaactgagtaaattacataaataacctcagtatcattcaacttcctaagaaaactccctaagtattgtgagggttatcagttattac 23429446  T
Q  342 gctcttttaaaagaaagtgaaaatgg-------ttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||  |||||||| |||||||| |||       || ||||||||||||||| ||||||||||  ||||||||||  ||| |||||||| |||||||||    
T  23429445 gcttctttaaaaggaagtgaaagtggttcgaaattaggattgttgaagcaaaagctttgtttacgttgaatatggtgagttttacttacgtttttgtt 23429348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 150 - 432
Target Start/End: Original strand, 35188342 - 35188609
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||  ||||||||||| |||||| ||||||||    
T  35188342 agcggataccttaatggatatccatggataaaataaacggattttttaactacccgctaattaatggatacggatgcggatttagtggtatccacacccg 35188441  T
Q  250 ctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgctctttt 349  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |               ||  ||||||||||||||||| |||| | |||| |||    
T  35188442 ctattaaaccgagtaaattacataaataacctcaatatcattcaactt---------------taggtattgtgagtgttatcagttattatgctccttt 35188526  T
Q  350 aaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||||  || ||||| | |||| |||||||||||||| |||||| ||| |||||||||| | |||||||||||||| |||||||    
T  35188527 aaaatgaaatgaaagttgttgagattgttgaagcaaaagctttatttatgttgaatataatgagctttacttatgattttgtt 35188609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 167 - 398
Target Start/End: Original strand, 33742451 - 33742681
Alignment:
Q  167 atatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgctattaaaccgattaaa 266  Q
    ||||||||| ||||||||||| ||||||||||||| | | ||||||||||| ||| |||||||| |||| |||| ||||||||||||||||| || ||||    
T  33742451 atatccatggataaaataaatggattttttaactatc-gttaattaatggatacagatgcggatgtaattgtatccacacccgctattaaacagagtaaa 33742549  T
Q  267 ttacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgctcttttaaaagaaagtgaaaatg 366  Q
    ||||||||||||||| ||||||||||||| |  |||||||||||||||  |||||| |||||||| | |||| |  ||| |||||||| |||||||| ||    
T  33742550 ttacataaataaccttaatatcattcaacttcctaagaaaacaccctaggtattgtaagtgttattagttattatactcctttaaaaggaagtgaaagtg 33742649  T
Q  367 gttgggattgttgaagcaagagctttgttttt 398  Q
    |||| |||||||||||||| || ||| |||||    
T  33742650 gttgagattgttgaagcaaaagtttttttttt 33742681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 245 - 432
Target Start/End: Complemental strand, 3926495 - 3926308
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgct 344  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |  |||||||||||| || |||||||||||||||||| |||| | |||    
T  3926495 acccgctataaaatcgagtaaattacataaataacctcaatatcattcaacttcctaagaaaacaccatagatattgtgagtgttatcagttattatgct 3926396  T
Q  345 cttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    | |||||||| |||| ||| ||||||||||||||||||||| || |||||||  ||||||||||| |||||||||| ||| |||||||    
T  3926395 catttaaaaggaagtaaaagtggttgggattgttgaagcaaaagttttgtttacgttgaatatgatgagctttactcatgcttttgtt 3926308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 160 - 382
Target Start/End: Original strand, 42878679 - 42878916
Alignment:
Q  160 ttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacaccc----------- 248  Q
    |||||||||||||||  ||||||||||  |||||||||| |||||  ||||||||||| |  ||||||||||||||||||| |||||||               
T  42878679 ttaatgaatatccatagataaaataaacggattttttaaatacccattaattaatggatatgaatgcggatttaatggtatccacacccgcggatatcca 42878778  T
Q  249 -----gctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgc 343  Q
         ||||||||||||| ||||||||||||||||||| |||| |||||||| || |||||||| | ||||   ||||| || ||||| | |||| ||||    
T  42878779 tacccgctattaaaccgagtaaattacataaataaccttaataccattcaactttctaagaaaa-aacctaggcattgttagcgttattagttattacgc 42878877  T
Q  344 tcttttaaaagaaagtgaaaatggttgggattgttgaag 382  Q
    || |||||||| |||||||| |||||| |||||||||||    
T  42878878 tcctttaaaaggaagtgaaagtggttgagattgttgaag 42878916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 150 - 277
Target Start/End: Complemental strand, 40057263 - 40057136
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||| | | ||||||||||| ||| ||||||||||||||||||||||||| ||  |||||||||||||||||| | ||||||    
T  40057263 agcggataccttaatggatatctacggataaaataaatagatattttaactacccgctaattaatggatacggatgcggatttaatggtatccgcacccg 40057164  T
Q  250 ctattaaaccgattaaattacataaata 277  Q
    ||||||||| || | |||||| ||||||    
T  40057163 ctattaaactgagtgaattacgtaaata 40057136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 39800163 - 39800253
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 240  Q
    |||||||  ||||||| ||||||| | ||||||||||| ||| ||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  39800163 agcggataccttaatggatatccacggataaaataaatggatattttaactacccgctaattaatggatacggatgcggatttaatggtat 39800253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 3926606 - 3926506
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    ||||||| |||||||| ||||| ||| ||||||||||  ||||||||||||||  ||| |||||||||     |||||||||||||||||| ||||||||    
T  3926606 agcggatatcttaatggatatctatggataaaataaacggattttttaactacatgcttattaatggatgtggatgcggatttaatggtatccacacccg 3926507  T
Q  250 c 250  Q
    |    
T  3926506 c 3926506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 42837920 - 42837821
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    ||||||| |||||||| ||||| ||| ||||||||||  ||||||||||||| ||| ||| ||||||||||  |||| |||||||| |||| ||||||||    
T  42837920 agcggatatcttaatggatatctatggataaaataaacggattttttaactatccgttaaataatggacac-tatgcagatttaatagtatccacacccg 42837822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 2209737 - 2209658
Alignment:
Q  340 acgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaaga-gctttgtttttgttgaatatgacgagcttta 418  Q
    |||||| |||||||  ||| |||| |||| |||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  2209737 acgctcctttaaaatgaagggaaagtggtcgggattgttgaagcaagaagctttgtttttgttgaatatgataagcttta 2209658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 39887075 - 39886978
Alignment:
Q  153 ggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 250  Q
    |||| |||||||| |||| |||| ||||||||||   || ||| ||||||| ||||||||||||| ||| |||| ||||| |||||||  ||||||||    
T  39887075 ggatatcttaatggatatacatggataaaataaacgaatatttcaactacctgctaattaatggatacagatgcagatttcatggtatctacacccgc 39886978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 432
Target Start/End: Complemental strand, 26621542 - 26621466
Alignment:
Q  356 aagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||||||| |||| | ||||||||||||||| | ||||| |||||| |||||||| |||||||| ||||| |||||||    
T  26621542 aagtgaaagtggtcgagattgttgaagcaagaaactttg-ttttgtagaatatgatgagctttatttatgcttttgtt 26621466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 150 - 432
Target Start/End: Complemental strand, 5110620 - 5110322
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||||||| |||||||||||  |||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  5110620 agcggataccttaatggatatccatggataaaataaatgaattttttaactacccgctaattaatggatacgaatgcggatttaatggtatccacacccg 5110521  T
Q  250 c----------------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 333  Q
    |                ||||||||| | ||||||||||||||||||||||||||||||||| || |||||||||||  ||  |||||||||||||||||    
T  5110520 cagatatccatacccgctattaaaccaaataaattacataaataacctcaatatcattcaactttctaagaaaacacgataggtattgtgagtgttatca 5110421  T
Q  334 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||||| |||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  5110420 attattacgctcctttaaaagaaagtgaaagtggttgggattgttgaagcaaaagctttgtttttgttgaatatgatgagttttacttatatttttgtt 5110322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 150 - 429
Target Start/End: Original strand, 13626031 - 13626326
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||| ||| ||||||||||  ||||||||||||||||||||||||||||| ||  ||||||||||||||||||  |||||||    
T  13626031 agcggataccttaatggatatctatggataaaataaacagattttttaactacccgctaattaatggatacggatgcggatttaatggtatctacacccg 13626130  T
Q  250 c----------------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 333  Q
    |                ||||||||||  ||| ||||||||||||||||||||||||||||| |  |||||||||||| ||  |||| ||||||||||||    
T  13626131 cgaatatccataccctctattaaaccggataagttacataaataacctcaatatcattcaacttcctaagaaaacaccttaggtattatgagtgttatca 13626230  T
Q  334 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgttttt 429  Q
    ||||| |||||| |||||||| |||||||| ||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||||    
T  13626231 attattacgctcctttaaaaggaagtgaaagtggttgggaatgttgaagcaagagctttgtttttgtcgaatatgatgaactttacttatgttttt 13626326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 159 - 432
Target Start/End: Complemental strand, 5705000 - 5704717
Alignment:
Q  159 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc-------- 250  Q
    ||||||| |||||| || ||||||||||| ||||||||||||| ||||||||||||||| ||  ||| |||||||||||||| |||||||||            
T  5705000 cttaatgtatatccgtggataaaataaatggattttttaactatccgctaattaatggatacggatgtggatttaatggtatccacacccgcaaatattc 5704901  T
Q  251 --------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacg 342  Q
            ||||||||||| ||||||||||||||||||||||||||||||||| |  |||||||||||||||  ||||||||||||||| | |||| |||    
T  5704900 atatctgctattaaaccgagtaaattacataaataacctcaatatcattcaacttcctaagaaaacaccctaggtattgtgagtgttattagttattacg 5704801  T
Q  343 ctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
     ||||||||||  ||||||||||||||||||| |||||      ||||||||||||||||||||||| ||||||||||||||||||||||    
T  5704800 ttcttttaaaaagaagtgaaaatggttgggatcgttga------agctttgtttttgttgaatatgatgagctttacttatgtttttgtt 5704717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 245 - 430
Target Start/End: Complemental strand, 13807846 - 13807661
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgct 344  Q
    ||||||||||||||| | ||||||| ||||||||||||||||||||||||| |  |||||||||||||||  ||||||||||||||||| |||| |||||    
T  13807846 acccgctattaaaccaagtaaattatataaataacctcaatatcattcaacttcctaagaaaacaccctaggtattgtgagtgttatcagttattacgct 13807747  T
Q  345 cttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttg 430  Q
    | |||||||  |||||||| ||||| ||||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||    
T  13807746 cctttaaaatgaagtgaaagtggtttggattgttgaagcaaaagctttgtttatgttgaatatgatgaactttacttatgtttttg 13807661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 153 - 432
Target Start/End: Original strand, 31575662 - 31575957
Alignment:
Q  153 ggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacc----- 247  Q
    |||| |||||||| |||| |||| ||||||||||   ||||| |||||||||||||||||||||| ||  ||||||||||||| |||| ||||||         
T  31575662 ggatatcttaatggatatgcatggataaaataaacgaattttgtaactacccgctaattaatggatacggatgcggatttaattgtatccacaccagcgg 31575761  T
Q  248 -----------cgctattaaaccgattaaattacataaataacctcaatatcattcaacatta-taagaaaacaccctaaatattgtgagtgttatcaat 335  Q
               |||||||||||| | ||||||||||||||||||||||||||||||||| ||  ||||||||||| |||  ||||||||||||||||| |    
T  31575762 atatccatatccgctattaaaccaagtaaattacataaataacctcaatatcattcaacttttctaagaaaacactctaggtattgtgagtgttatcagt 31575861  T
Q  336 tatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||| ||||||||| ||||| |||||||| ||||||||||||||||| ||| ||||| |||| |||||||||||| || |||||||||||||||||||    
T  31575862 tattacgctcttt-aaaaggaagtgaaagtggttgggattgttgaatcaaaagcttggtttatgttgaatatgatgaactttacttatgtttttgtt 31575957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 167 - 432
Target Start/End: Original strand, 45150974 - 45151254
Alignment:
Q  167 atatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacaccc----------------gc 250  Q
    ||||||||| ||||||||||  ||||||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||||                ||    
T  45150974 atatccatggataaaataaacggattttttaactatccgctaattaatggatacagatgcggatttaatggtatccacacccacagatatccatatccgc 45151073  T
Q  251 tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgctctttta 350  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |  | |||||||||  |   ||||||||||||||||  |||| |||||| ||||    
T  45151074 tattaaaccgagtaaattacataaataacctcaatatcattcaacttccttagaaaacact-tcggtattgtgagtgttatcggttattacgctccttta 45151172  T
Q  351 aaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
     |||||||||||| ||||||||||||||||||||| | ||| |||| || | ||||||| ||||||||||||| ||||||||    
T  45151173 taagaaagtgaaagtggttgggattgttgaagcaaaaacttggtttatgctaaatatgatgagctttacttatatttttgtt 45151254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 5939080 - 5938989
Alignment:
Q  159 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 250  Q
    ||||||| |||| |||| ||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||    
T  5939080 cttaatggatattcatggatataataaatggattttttaactacccgctaattaatggatacaaatgcggatttaatggtatctacacccgc 5938989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 42622396 - 42622514
Alignment:
Q  159 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgctattaaac 258  Q
    ||||||| ||||||| | ||||||||||| ||| ||||||||||||| ||||||||| | ||  |||||||||||||||||| | |||||||||||||||    
T  42622396 cttaatggatatccacggataaaataaatggatattttaactacccgttaattaatgaatacggatgcggatttaatggtatccgcacccgctattaaac 42622495  T
Q  259 cgattaaattacataaata 277  Q
     || | |||||| ||||||    
T  42622496 tgagtgaattacgtaaata 42622514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 366 - 432
Target Start/End: Complemental strand, 5938908 - 5938842
Alignment:
Q  366 ggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| || |||||||||| ||||||||    
T  5938908 ggttgagattgttgaagcaagaactttgtttttgttgaatatgatgaactttacttatatttttgtt 5938842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 5938978 - 5938912
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacacc 311  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||||||| |   |||||||||||    
T  5938978 acccgctattaaaccgagtatattacataaattacctcaatatcattcaacttccgaagaaaacacc 5938912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 13807918 - 13807857
Alignment:
Q  189 gattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 250  Q
    ||||||||||||||||||| ||||||||| ||  ||| |||||||||||||| |||||||||    
T  13807918 gattttttaactacccgcttattaatggatacggatgtggatttaatggtatccacacccgc 13807857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 160 - 432
Target Start/End: Complemental strand, 38952024 - 38951736
Alignment:
Q  160 ttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc--------- 250  Q
    |||||| |||| || | ||||||||||  ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||             
T  38952024 ttaatggatattcacggataaaataaacagattttttaactacccgctaattaatggatacagatgcggatttaatggtattcacacccgcatttatcca 38951925  T
Q  251 -------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgc 343  Q
           |||||||||||  |||||||||||||||||||||||||||||||| |  | |||||||||| ||  ||||||||||||||||| |||| ||||    
T  38951924 tatccgctattaaaccgaggaaattacataaataacctcaatatcattcaacttcctgagaaaacaccttaggtattgtgagtgttatcagttattacgc 38951825  T
Q  344 tcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    || |||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38951824 tcctttaaaatgaagtgaaagtggttgggattgttgaagcaagagctttgtttttgttgaatatgatgagctttacttatgtttttgtt 38951736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 159 - 432
Target Start/End: Complemental strand, 19842133 - 19841844
Alignment:
Q  159 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc-------- 250  Q
    ||||||| ||||||||| ||||||||||  |||||||||||||  |||||||||||||| | | |||||||||||||||| | |||||||||            
T  19842133 cttaatggatatccatggataaaataaacggattttttaactaatcgctaattaatggataaagatgcggatttaatggtttccacacccgcgaatatca 19842034  T
Q  251 --------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacg 342  Q
            ||||||||||| ||||||||||||||||||| ||||||||||||  || |||||||| ||||||  ||||||||||||||| | |||| |||    
T  19842033 atacctgctattaaaccgagtaaattacataaataaccttaatatcattcaattttctaagaaaaaaccctaggtattgtgagtgttattagttattacg 19841934  T
Q  343 ctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||| |||||||| ||||||||||||||||||||||||| |||| |||||| ||||| |||||||||| || ||||||||||| |||||||    
T  19841933 ctcatttaaaaggaagtgaaaatggttgggattgttgatgcaatagctttatttttcttgaatatgatgaactttacttatgcttttgtt 19841844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 150 - 277
Target Start/End: Original strand, 40568655 - 40568782
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||||| | ||||||||||| ||| ||||||||||||||||||||||||| ||  |||||||||||||||||||| ||||||    
T  40568655 agcggataccttaatggatatccacggataaaataaatggatattttaactacccgctaattaatggatacggatgcggatttaatggtattcgcacccg 40568754  T
Q  250 ctattaaaccgattaaattacataaata 277  Q
    ||||||||| || | |||||| ||||||    
T  40568755 ctattaaactgagtgaattacgtaaata 40568782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 432
Target Start/End: Complemental strand, 22278560 - 22278428
Alignment:
Q  300 taagaaaacaccctaaatattgtgagtgttatcaattatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttg 399  Q
    |||||||| || |||  ||||||||||||||| | |||| ||||||||||||||| |||||||| |||||| |||| |||| ||||||||||||||||||    
T  22278560 taagaaaaaactctaggtattgtgagtgttattagttattacgctcttttaaaaggaagtgaaagtggttgagatttttgatgcaagagctttgtttttg 22278461  T
Q  400 ttgaatatgacgagctttacttatgtttttgtt 432  Q
    |  ||||| | || |||||||||||||||||||    
T  22278460 tcaaatattatgaactttacttatgtttttgtt 22278428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 316 - 432
Target Start/End: Complemental strand, 41039564 - 41039449
Alignment:
Q  316 atattgtgagtgttatcaattatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagct 415  Q
    |||||||||||||||||| |||| |||||| |||||||| || ||||| ||||||| ||||||||||||| ||||||| || |||||||||||| | | |    
T  41039564 atattgtgagtgttatcagttattacgctcctttaaaaggaaatgaaagtggttggaattgttgaagcaaaagctttgcttatgttgaatatgatg-gtt 41039466  T
Q  416 ttacttatgtttttgtt 432  Q
    |||||||||||||||||    
T  41039465 ttacttatgtttttgtt 41039449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 41041850 - 41041750
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||  ||| ||||||||||| |||||||||||||||||||||||||| || ||| ||||| |||||||| ||| ||||||||    
T  41041850 agcggataccttaatggatatttatggataaaataaatggattttttaactacccgctaattaatagatacagatgcgaatttaatgatatccacacccg 41041751  T
Q  250 c 250  Q
    |    
T  41041750 c 41041750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 22279397 - 22279315
Alignment:
Q  167 atatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 250  Q
    ||||||||| ||||||||||| ||||||| ||||||||| ||||||||||| ||| |||| |||||||| |||| |||||||||    
T  22279397 atatccatggataaaataaatggattttt-aactacccgttaattaatggatacagatgcagatttaatagtatccacacccgc 22279315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 350 - 432
Target Start/End: Complemental strand, 23627037 - 23626954
Alignment:
Q  350 aaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||||||||||||| | |||||||||||||||||||| || |||||||||||| ||||||| ||||||||  |||| |||||||    
T  23627037 aaaagaaagtgaaagtagttgggattgttgaagcaagaagttttgtttttgttaaatatgatgagctttatatatgcttttgtt 23626954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 43624647 - 43624597
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaatatcattcaac 295  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  43624647 acccgctattaaaccgagtaaattacataaataaccttaatatcattcaac 43624597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 432
Target Start/End: Original strand, 17120231 - 17120323
Alignment:
Q  340 acgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagag-ctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||||| |||||||| |||||||| |||| |||||||||||  |||||  ||||||||||||||||||||| |||||||| ||||| |||||||    
T  17120231 acgctcctttaaaaggaagtgaaagtggtcgggattgttgac-caagaaactttgtttttgttgaatatgatgagctttatttatgcttttgtt 17120323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 29117409 - 29117328
Alignment:
Q  159 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 240  Q
    |||||| ||||| |||| ||||||||||  ||| ||||||||||||||||||||||||| ||  |||||||||||| |||||    
T  29117409 cttaataaatattcatggataaaataaacggatattttaactacccgctaattaatggatacggatgcggatttaacggtat 29117328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 40714806 - 40714867
Alignment:
Q  372 gattgttgaagcaaga-gctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||| | |||||||||||    
T  40714806 gattgttgaagcaagaagctttgtttttgttgaatatgatgagctttattaatgtttttgtt 40714867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 423
Target Start/End: Complemental strand, 51357369 - 51357292
Alignment:
Q  347 tttaaaagaaagtgaaaatggttgggattgttgaagcaaga-gctttgtttttgttgaatatgacgagctttacttat 423  Q
    ||||||||| ||||||| |||| |||||||||||| ||| | |||||||||||||||||||||| |||||||| ||||    
T  51357369 tttaaaagatagtgaaagtggtcgggattgttgaaacaataagctttgtttttgttgaatatgatgagctttatttat 51357292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 331
Target Start/End: Original strand, 40714653 - 40714736
Alignment:
Q  248 cgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttat 331  Q
    |||||||||||||| ||||||||||||||||| | |||| | |||||| || |||| ||| | ||||| |||||||||||||||    
T  40714653 cgctattaaaccgagtaaattacataaataactttaatacctttcaactttttaagcaaaaaacctaagtattgtgagtgttat 40714736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 432
Target Start/End: Complemental strand, 42555513 - 42555427
Alignment:
Q  347 tttaaaagaaagtgaaaatggttgggattgttgaagcaaga-gctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||||||| |||||||| |||| ||||| |||||||||| | ||||||||||||||||||||||  | ||||| ||||| |||||||    
T  42555513 tttaaaaggaagtgaaagtggtcgggatcgttgaagcaataagctttgtttttgttgaatatgataacctttatttatgcttttgtt 42555427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 36464519 - 36464619
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||| | ||||||||| ||||||||||  ||| ||||||||| |||||||||||| || ||  |||||||||||||| ||| | ||||||    
T  36464519 agcggataccttaacggatatccatggataaaataaacggatattttaactatccgctaattaatagatacggatgcggatttaatgatatccgcacccg 36464618  T
Q  250 c 250  Q
    |    
T  36464619 c 36464619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 33340782 - 33340712
Alignment:
Q  340 acgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatga 409  Q
    |||||| |||||||| |||||||| |||  || |||||||||||||| | |||||||||||||||||||||    
T  33340782 acgctcctttaaaaggaagtgaaagtggccggaattgttgaagcaagaaactttgtttttgttgaatatga 33340712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 8819241 - 8819318
Alignment:
Q  347 tttaaaagaaagtgaaaatggttgggattgttgaagcaag--agctttgtttttgttgaatatgacgagctttacttat 423  Q
    ||||||||| ||||||| |||| || |||||||||||||   ||||||||||||||||||||| | |||||||| ||||    
T  8819241 tttaaaagatagtgaaagtggtcgg-attgttgaagcaaataagctttgtttttgttgaatattatgagctttatttat 8819318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 36464760 - 36464831
Alignment:
Q  347 tttaaaagaaagtgaaaatggttgggattgttgaagcaaga-gctttgtttttgttgaatatgacgagcttt 417  Q
    ||||||||| ||||||| |||  |||||||||||| ||  | |||||||||||||||||||||| |||||||    
T  36464760 tttaaaagatagtgaaagtggccgggattgttgaaacattaagctttgtttttgttgaatatgatgagcttt 36464831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 42555749 - 42555663
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatg 236  Q
    |||||||  ||||||| ||||| ||||||||||||||  ||| |||||||||||  |||||||||| | |  |||| ||||||||||    
T  42555749 agcggataccttaatggatatcaatgaataaaataaacagatattttaactaccaactaattaatgaatatgaatgtggatttaatg 42555663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 43624716 - 43624675
Alignment:
Q  189 gattttttaactacccgctaattaatggacacaaatgcggat 230  Q
    ||||||||||||||||||||||||||||| ||  ||||||||    
T  43624716 gattttttaactacccgctaattaatggatacggatgcggat 43624675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 51357499 - 51357458
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaata 286  Q
    |||||||||||||| || ||||||||||||||||||| ||||    
T  51357499 acccgctattaaactgaataaattacataaataaccttaata 51357458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 8819009 - 8819109
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||| | |||| |||| ||||||||||  ||| ||||||||| | | ||||||||||| |   |||||||||||||||||| | ||||||    
T  8819009 agcggataccttaacggatattcatggataaaataaacggatattttaactatctgttaattaatggatatggatgcggatttaatggtatccgcacccg 8819108  T
Q  250 c 250  Q
    |    
T  8819109 c 8819109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 17120044 - 17120088
Alignment:
Q  193 ttttaactacccgctaattaatggacacaaatgcggatttaatgg 237  Q
    ||||||||| ||||||||||||||| || |||||||| |||||||    
T  17120044 ttttaactatccgctaattaatggatacgaatgcggacttaatgg 17120088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 44854021 - 44853981
Alignment:
Q  161 taatgaatatccatgaataaaataaattgattttttaacta 201  Q
    |||||||||| |||||||||||||||||||| ||| |||||    
T  44854021 taatgaatattcatgaataaaataaattgatatttcaacta 44853981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 150 - 432
Target Start/End: Complemental strand, 10788887 - 10788590
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||||||| ||||||||||  || |||||||||||| ||||||||||||| ||||||| ||||||||| |||| ||||||||    
T  10788887 agcggataccttaatggatatccatggataaaataaac-gaatttttaactacctgctaattaatggatacaaatgtggatttaatagtatccacacccg 10788789  T
Q  250 ----------------ctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 333  Q
                    |||||||||| | ||||||||||||||||||||||||||||||||| |  |||||||||||| ||  |||||||| ||||||||    
T  10788788 aggagatccatattcgctattaaaccaactaaattacataaataacctcaatatcattcaacttcctaagaaaacaccttaggtattgtgattgttatca 10788689  T
Q  334 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||||||    
T  10788688 attattacgctcctttaaaagaaagtgaaagtggttgggattgtttaagcaagagctttgtttttgttgaatatgatgaactttacttatgcttttgtt 10788590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 245 - 432
Target Start/End: Complemental strand, 8577039 - 8576864
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgct 344  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |  |||||||||||| ||  ||||||||||||||||| |||| |||||    
T  8577039 acccgctattaaaccgagtaaattatataaataacctcaatatcattcaacttcctaagaaaacaccttaggtattgtgagtgttatcagttattacgct 8576940  T
Q  345 cttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    | |||||||| |||||||| |||      |||||||      ||||||||||||||||||||||| ||||||||||||||||||||||    
T  8576939 cctttaaaaggaagtgaaagtgg------ttgttga------agctttgtttttgttgaatatgatgagctttacttatgtttttgtt 8576864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 7622714 - 7622614
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||||||| ||||||||||  |||||||||  |||||||||||||||||| ||  |||||||||||||||||| ||||||||    
T  7622714 agcggataccttaatggatatccatggataaaataaacggattttttatttacccgctaattaatggatacggatgcggatttaatggtatccacacccg 7622615  T
Q  250 c 250  Q
    |    
T  7622614 c 7622614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 641748 - 641837
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggta 239  Q
    ||||||| | |||||| ||||||||| ||||||||||  ||| ||||||||| ||||||||||||||| ||| ||| |||||||||||||    
T  641748 agcggatattttaatggatatccatggataaaataaacggatattttaactatccgctaattaatggatacatatgaggatttaatggta 641837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 432
Target Start/End: Original strand, 641971 - 642053
Alignment:
Q  351 aaagaaagtgaaaatggttgggattgttgaagcaaga-gctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||| ||||| |||||||||| |||||||| |||||| |||||||||||||||||||||| ||| |||||||| | |||||||    
T  641971 aaaggaagtggaaatggttggaattgttgacgcaagaagctttgtttttgttgaatatgatgagttttacttaagcttttgtt 642053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 28582576 - 28582478
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacaccc 248  Q
    |||||||  ||| ||| ||||||||| ||||||||||  ||| ||||||||||||| |||||| |||| |||||| |||||||||| |||| |||||||    
T  28582576 agcggataccttgatggatatccatggataaaataaacggatattttaactacccgttaattagtggatacaaatacggatttaatagtatccacaccc 28582478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 409
Target Start/End: Original strand, 35167186 - 35167279
Alignment:
Q  317 tattgtgagtgttatcaattatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatga 409  Q
    |||| ||||| |||| | |||| |||||| |||||||| |||||||| ||| || ||||||||||| ||| |||||||||||||||||||||||    
T  35167186 tattatgagtattattagttattacgctcctttaaaaggaagtgaaagtggatgcgattgttgaagtaagaagctttgtttttgttgaatatga 35167279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 432
Target Start/End: Complemental strand, 7622531 - 7622473
Alignment:
Q  373 attgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||    
T  7622531 attgttgaagcaaaagctttgtttttgttgaatatgatgagattta-ttatgtttttgtt 7622473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 347 - 432
Target Start/End: Complemental strand, 28582340 - 28582254
Alignment:
Q  347 tttaaaagaaagtgaaaatggttgggattgttgaagcaagag-ctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||||||||||||||||  |||| |||||| ||||||||| |  |||||| |||||||||||||| || ||||| |||||||||||||    
T  28582340 tttaaaagaaagtgaacgtggtcgggatttttgaagcaaaaaactttgtatttgttgaatatgatgaactttatttatgtttttgtt 28582254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 35167005 - 35167095
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 240  Q
    |||||||  ||||||  ||||||||| ||||||||||  ||| |||||||||||||||||||||| || ||  ||| ||||||||||||||    
T  35167005 agcggataccttaatagatatccatggataaaataaacggatattttaactacccgctaattaattgatacggatgtggatttaatggtat 35167095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 17930223 - 17930270
Alignment:
Q  387 agctttgtttttgttgaatatgacgagctttacttatgtttttgttga 434  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||||    
T  17930223 agctttgtttttgttgaatatgatgaactttatttatgtttttgttga 17930270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 7622603 - 7622541
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaa 307  Q
    ||||||||||||||||| |||||||  |||||||| | ||||||||||||| || ||||||||    
T  7622603 acccgctattaaaccgagtaaattaagtaaataacattaatatcattcaactttctaagaaaa 7622541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 8577123 - 8577051
Alignment:
Q  177 ataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    ||||||||||  | ||||||||| | ||| ||||||||||| ||| |||| ||||||||||||| ||||||||    
T  8577123 ataaaataaacggtttttttaaccaaccgttaattaatggatacagatgcagatttaatggtatccacacccg 8577051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 10408771 - 10408821
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaatatcattcaac 295  Q
    |||| |||||||||||| ||||||||||||||||| | |||| ||||||||    
T  10408771 acccactattaaaccgagtaaattacataaataacgttaataccattcaac 10408821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 150 - 432
Target Start/End: Original strand, 25874420 - 25874719
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaata--aaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacc 247  Q
    |||||||  ||||||| ||||||||| |||  |||||||  ||||||||||||||||||||||||||||| ||  |||||||||||||||||| ||||||    
T  25874420 agcggataccttaatggatatccatggatataaaataaacggattttttaactacccgctaattaatggatacggatgcggatttaatggtatccacacc 25874519  T
Q  248 cgc----------------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttat 331  Q
    |||                ||||||||||| || |||||||||||||||||||||||||||||| |   |||||||||||||| ||||||||||||||||    
T  25874520 cgcggatatccatacccgttattaaaccgaatatattacataaataacctcaatatcattcaacttccgaagaaaacaccctagatattgtgagtgttat 25874619  T
Q  332 caattatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgt 431  Q
    || |||| |||||| |||||||| |||||||| ||||||||| |||| ||||||||||||||||||| |||||||||| ||| |||||||||||||||||    
T  25874620 cagttattacgctcctttaaaaggaagtgaaagtggttgggaatgttaaagcaagagctttgttttt-ttgaatatgatgagttttacttatgtttttgt 25874718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 150 - 432
Target Start/End: Original strand, 27926352 - 27926648
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacc-- 247  Q
    |||||||  ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||| |||||       
T  27926352 agcggataccttaatggatatccatggataaaataaatagattttttaactacccgctaattaatggatacggatgcggatttaatggtatccacacatg 27926451  T
Q  248 --------------cgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 333  Q
                  |||||||||||||| |||||||  ||||||||||||||| |||||||| |  ||||||||   ||||  ||||||||||||||| |    
T  27926452 cggatatctatatgcgctattaaaccgaataaattatgtaaataacctcaataccattcaacttcctaagaaaaa--cctaggtattgtgagtgttatta 27926549  T
Q  334 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
     |||| ||  || |||||||  ||||||||  ||||||||||||||||| |||||||||||||||||||||||| | ||| ||||| ||||||||||||    
T  27926550 gttattacattcctttaaaatgaagtgaaagaggttgggattgttgaagtaagagctttgtttttgttgaatataatgagttttacctatgtttttgtt 27926648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 150 - 432
Target Start/End: Complemental strand, 5295625 - 5295322
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacc-- 247  Q
    |||||||  ||||||| ||||||||||||||||||||   ||||||||||||||| |||||||||||| ||| |||| |||||||||||||  |||||      
T  5295625 agcggataccttaatggatatccatgaataaaataaacgtattttttaactacccactaattaatggatacagatgcagatttaatggtatctacacctg 5295526  T
Q  248 --------------cgctattaaaccgattaaattacataaataacctcaatatcattcaacattataaga----aaacaccctaaatattgtgagtgtt 329  Q
                  ||||||||||| || |||||||||||||||| |||||||||||| ||| |  |||||    |||||||| | ||||| ||||||||    
T  5295525 cggatatccatatccgctattaaactgagtaaattacataaataatctcaatatcattaaacttcctaagaaaacaaacaccccagatattatgagtgtt 5295426  T
Q  330 atcaattatcacgctcttttaaaagaaagtgaaaatggttgggattgtt-gaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttt 428  Q
    |||  |||| |||||| |||||||| | |||||| |||||| ||||||| |||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  5295425 atcggttattacgctcctttaaaaggatgtgaaagtggttgagattgttggaagcaagtgctttgtttttgttgaatatgatgagctttagttatgtttt 5295326  T
Q  429 tgtt 432  Q
    ||||    
T  5295325 tgtt 5295322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 150 - 432
Target Start/End: Complemental strand, 21288503 - 21288211
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgatttttt-aactacccgctaattaatggacacaaatgcggatttaatggtattcacaccc 248  Q
    ||||||| |||||||| ||||| ||| ||||||||||  |||||||| ||||||||||||||||||||| |   |||||||||||||||||| |||||||    
T  21288503 agcggatatcttaatggatatctatggataaaataaacggatttttttaactacccgctaattaatggatagggatgcggatttaatggtatccacaccc 21288404  T
Q  249 gc----------------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatc 332  Q
    ||                ||||||||| | ||||||||||||||||| ||||||||||||||| |  | |||||||||||||  ||||||||||||||||    
T  21288403 gcggatatccatacccgctattaaaccaagtaaattacataaataacttcaatatcattcaacttcctgagaaaacaccctaggtattgtgagtgttatc 21288304  T
Q  333 aattatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    | |||| ||| || ||| |||| || ||||| ||||||| ||||||||      ||||||||||||||||||||||| ||  |||||||||| |||||||    
T  21288303 agttattacgatccttttaaaggaaatgaaagtggttggaattgttga------agctttgtttttgttgaatatgatga-ttttacttatgattttgtt 21288211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 150 - 323
Target Start/End: Original strand, 3778696 - 3778884
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||| |||||||||||| ||||| || |||||    
T  3778696 agcggataccttaatggatatccatgaataaaataaacagattttttaactatccgctaattaatggatacagatgcggatttaacggtatccatacccg 3778795  T
Q  250 ---------------ctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtg 323  Q
                   ||||||||| || ||||||||||||||||||| ||||||||||||| |  |||||||| ||||||| |||||||    
T  3778796 cggatattcataccactattaaacagagtaaattacataaataaccttaatatcattcaacttcctaagaaaaaaccctaagtattgtg 3778884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 245 - 331
Target Start/End: Complemental strand, 13826352 - 13826266
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttat 331  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||| |  |||||||||||||||  |||||||||||||||    
T  13826352 acccgctattaaaccgagtaaattacattaataacctcaatatcattcaacttcctaagaaaacaccctaggtattgtgagtgttat 13826266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 13826085 - 13826022
Alignment:
Q  369 tgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||    
T  13826085 tgggaatgttgaagcaagagctttgtttttgttgaatatgatgaactttacttatgcttttgtt 13826022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 12149396 - 12149296
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||||| | ||||||||||| ||| ||||||||||||| ||||||||||| ||  |||| ||||||||||||| | ||||||    
T  12149396 agcggataccttaatggatatccacggataaaataaatggatattttaactacccgttaattaatggatacggatgctgatttaatggtatccgcacccg 12149297  T
Q  250 c 250  Q
    |    
T  12149296 c 12149296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 432
Target Start/End: Original strand, 48251431 - 48251529
Alignment:
Q  336 tatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagc--tttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||||||||| | ||||||  ||||||| |||| ||||||||||||||| ||    |||||||||||||||||||| |||||||| ||||| |||||||    
T  48251431 tatcacgctcctctaaaagggagtgaaagtggtcgggattgttgaagcatgaaaaatttgtttttgttgaatatgatgagctttatttatgcttttgtt 48251529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 431
Target Start/End: Complemental strand, 36584577 - 36584488
Alignment:
Q  343 ctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagag-ctttgtttttgttgaatatgacgagctttacttatgtttttgt 431  Q
    ||||||||||||  ||||||| |||| |||||| ||||||||| |  ||||||||||||||||||||| || ||||| |||| |||||||    
T  36584577 ctcttttaaaaggtagtgaaagtggtcgggattcttgaagcaataaactttgtttttgttgaatatgatgaactttatttatatttttgt 36584488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 13826446 - 13826396
Alignment:
Q  167 atatccatgaataaaataaattgattttttaactacccgctaattaatgga 217  Q
    ||||||||| ||||||||||  |||||||||||||| ||||||||||||||    
T  13826446 atatccatggataaaataaacggattttttaactactcgctaattaatgga 13826396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 48251216 - 48251296
Alignment:
Q  160 ttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 240  Q
    |||||| ||||| ||| ||||||||||| ||| |||||| || | |||||||||||||  || || |||||||||||||||    
T  48251216 ttaatggatatctatggataaaataaatggatattttaattaactgctaattaatggatgcagatacggatttaatggtat 48251296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 429
Target Start/End: Original strand, 3778883 - 3778920
Alignment:
Q  392 tgtttttgttgaatatgacgagctttacttatgttttt 429  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  3778883 tgtttttgttgaatatgatgagctttacttatgctttt 3778920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 36585104 - 36585036
Alignment:
Q  182 ataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 250  Q
    |||||| ||| ||||| ||||||||||||||||||| ||  |||| |||| |||||||| | |||||||    
T  36585104 ataaatagatattttatctacccgctaattaatggatacggatgcagattaaatggtatccgcacccgc 36585036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 48251319 - 48251363
Alignment:
Q  247 ccgctattaaaccgattaaattacataaataacctcaatatcatt 291  Q
    ||||||||||||||| ||||||| ||||||||||| |||| ||||    
T  48251319 ccgctattaaaccgagtaaattagataaataaccttaataccatt 48251363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 245 - 432
Target Start/End: Complemental strand, 11481718 - 11481531
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgct 344  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||||| |  ||||||||||||||| |||||||||||||||||| |||| |||||    
T  11481718 acccgctattaaaccgagtaaattatgtaaataacctcaatatcattcaacttcctaagaaaacaccctagatattgtgagtgttatcagttattacgct 11481619  T
Q  345 cttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    | ||||||||||||| ||||||||||||||||||||||||| |  ||||||| |||||||||||| ||||||||||||||||||||||    
T  11481618 cctttaaaagaaagtaaaaatggttgggattgttgaagcaaaatttttgtttatgttgaatatgatgagctttacttatgtttttgtt 11481531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 159 - 432
Target Start/End: Original strand, 8226968 - 8227260
Alignment:
Q  159 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacaccc---------- 248  Q
    ||||||| |||| |||| ||||||||||  ||| |||||||||||||||||||||| || ||  |||||||||||||||||| |||||||              
T  8226968 cttaatggatatacatggataaaataaacggatcttttaactacccgctaattaatagatacggatgcggatttaatggtatccacacccgcggatattc 8227067  T
Q  249 ------gctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca---attatc 339  Q
          ||||||||||||| ||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||||||||||||||    ||||     
T  8227068 atacccgctattaaaccgagtaaattacataaataacctcaatatcattcaacttcctaagaaaacaccctaagtattgtgagtgttatcatcggttatt 8227167  T
Q  340 acgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||||| |||||||| |||||||| ||||||  ||||||||||||| | |||||||| |||||||||||| ||| ||||||||||||||||||    
T  8227168 acgctcctttaaaaggaagtgaaagtggttgacattgttgaagcaaaaactttgtttatgttgaatatgatgagttttacttatgtttttgtt 8227260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 150 - 432
Target Start/End: Original strand, 9762645 - 9762943
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacaccc- 248  Q
    |||||||  ||||||| ||||||||| ||||||||||  ||||||||||||||| ||||||||||||| |   |||||||||| ||||||| |||| ||     
T  9762645 agcggataccttaatggatatccatggataaaataaacagattttttaactacctgctaattaatggatatggatgcggatttgatggtatccacatcct 9762744  T
Q  249 ---------------gctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 333  Q
                   ||||||||| ||| ||||||||||||||||||| ||||||||||||| |  ||||||||||||||| |||||||||||||||| |    
T  9762745 cggatatccatactcgctattaaatcgaataaattacataaataaccttaatatcattcaacttcctaagaaaacaccctagatattgtgagtgttatta 9762844  T
Q  334 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
     |||| |||||| |||||||  |||| ||| ||||||||||||||||||||| || ||||||| |||||||||||| || |||||||||||||||||||    
T  9762845 gttattacgctcctttaaaatgaagtaaaagtggttgggattgttgaagcaaaagttttgtttatgttgaatatgatgaactttacttatgtttttgtt 9762943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 150 - 432
Target Start/End: Original strand, 7986921 - 7987219
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacaccc- 248  Q
    |||||||  ||||||| ||||||||| ||||||||||  ||||| | ||||||| ||||||||||||| ||  ||||||||||||||||||||||||||     
T  7986921 agcggataccttaatggatatccatggataaaataaacggatttgtcaactacctgctaattaatggatacggatgcggatttaatggtattcacacccg 7987020  T
Q  249 ---------------gctattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 333  Q
                   ||||||||||||| ||||||||||||||||||| |||| |||||||| |  |||||||| | | ||  |||||||| |||||| |    
T  7987021 cggatatccatacccgctattaaaccgaataaattacataaataaccttaataccattcaacttattaagaaaaaaacataggtattgtgaatgttatta 7987120  T
Q  334 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
     |||| |||||| |||||||| || ||||| |||||| ||||||||| |||||| |||||||||||||||||| || || ||||||  ||| |||||||    
T  7987121 gttattacgctcctttaaaaggaaatgaaagtggttgagattgttgatgcaagaactttgtttttgttgaataagatgaactttacccatgcttttgtt 7987219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 7968177 - 7968280
Alignment:
Q  147 cgtagcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacac 246  Q
    ||||||||||  ||||||| ||||||||| ||||||||||  ||||||| ||||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  7968177 cgtagcggataccttaatggatatccatggataaaataaacggatttttcaactacccgctaattaatggatacgcatgcggatttaatggtattcacac 7968276  T
Q  247 ccgc 250  Q
    ||||    
T  7968277 ccgc 7968280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 36582650 - 36582750
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    ||||||| |||||||| ||||||||||||||||||||  ||||||||||||| || |||||||||||| ||  ||||||||||||| |||| ||||||||    
T  36582650 agcggatatcttaatggatatccatgaataaaataaacggattttttaactatccactaattaatggatacggatgcggatttaatagtatacacacccg 36582749  T
Q  250 c 250  Q
    |    
T  36582750 c 36582750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 432
Target Start/End: Original strand, 7968350 - 7968447
Alignment:
Q  335 ttatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||| |||||| ||||||||||| ||||| |||||||||||||||| |||||| || ||||||||||||||| || || |||||| |||| |||||||    
T  7968350 ttattacgctcctttaaaagaaaatgaaagtggttgggattgttgatgcaagaactatgtttttgttgaataagatgaactttacctatgcttttgtt 7968447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 409
Target Start/End: Original strand, 36582829 - 36582896
Alignment:
Q  342 gctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatga 409  Q
    |||| |||||| | |||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  36582829 gctcatttaaatggaagtgaaagtggttgggattgttgaatcaagagctttgtttttgttgaatatga 36582896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 28211643 - 28211733
Alignment:
Q  160 ttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 250  Q
    |||||| ||||| ||| ||||||||||  ||| |||||||||||| |||||||||||| || |||||||||||||| |||| |||||||||    
T  28211643 ttaatggatatctatggataaaataaacggatattttaactacccactaattaatggatacgaatgcggatttaatagtatccacacccgc 28211733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 31006444 - 31006354
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 240  Q
    ||||||| |||||||| ||||||||| ||||||||||  ||| ||||||||| |||||||||||||||||| ||  ||||||||| |||||    
T  31006444 agcggatatcttaatggatatccatggataaaataaacggatattttaactatccgctaattaatggacacgaacacggatttaacggtat 31006354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 432
Target Start/End: Original strand, 6870554 - 6870645
Alignment:
Q  342 gctcttttaaaagaaagtgaaaatggttgggattgttgaagcaaga-gctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||| |||||||| |||||||| || | || |||||| |||||||| | |||||||||||||||||||| |||||||| ||||| |||||||    
T  6870554 gctcctttaaaaggaagtgaaagtgatcggaattgttaaagcaagaagttttgtttttgttgaatatgatgagctttatttatgcttttgtt 6870645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 6870321 - 6870409
Alignment:
Q  152 cggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 240  Q
    ||||| |||||||| ||||||||| ||||||||||   ||  |||||||||||| |||||||| || ||| |||| |||||||||||||    
T  6870321 cggatatcttaatggatatccatggataaaataaacatataatttaactacccgttaattaattgatacatatgcagatttaatggtat 6870409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 31006207 - 31006144
Alignment:
Q  347 tttaaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatga 409  Q
    ||||||||||||||||| |||  || |||||||||||||| | |||||||||||||||||||||    
T  31006207 tttaaaagaaagtgaaagtggccggaattgttgaagcaagaaactttgtttttgttgaatatga 31006144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 432
Target Start/End: Complemental strand, 13356031 - 13355917
Alignment:
Q  317 tattgtgagtgttatcaattatcacgctcttttaaaagaaag-tgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagct 415  Q
    |||||||| | |||| | |||| |||||| |||||||| ||| ||||| |||||| ||||||||||  |||  |||||||||||||||||| || ||| |    
T  13356031 tattgtgaatattattagttattacgctcctttaaaaggaaggtgaaagtggttgcgattgttgaaataag--ctttgtttttgttgaataggatgagtt 13355934  T
Q  416 ttacttatgtttttgtt 432  Q
    ||||||| | |||||||    
T  13355933 ttacttaagcttttgtt 13355917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 7968294 - 7968334
Alignment:
Q  248 cgctattaaaccgattaaattacataaataacctcaatatc 288  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  7968294 cgctattaaaccgaataaattacataaataaccttaatatc 7968334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 162 - 432
Target Start/End: Original strand, 23809405 - 23809691
Alignment:
Q  162 aatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc----------- 250  Q
    |||| |||| |||| ||||||||||  | ||||||||||||||||||||||||||| ||  |||||||||||||||||| |||||||||               
T  23809405 aatggatattcatggataaaataaacaggttttttaactacccgctaattaatggatacggatgcggatttaatggtatccacacccgcggatatccata 23809504  T
Q  251 -----tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacgctc 345  Q
         ||||||||||| ||||||||||||||||||||||||||||||||| |  |||||||||||  ||  ||||||||||||||| | |||| ||||||    
T  23809505 cttgctattaaaccgagtaaattacataaataacctcaatatcattcaacttcctaagaaaacacgatacgtattgtgagtgttataagttattacgctc 23809604  T
Q  346 ttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
     |||||||| || ||||| ||||||||||||||||||||| || ||||||| |||||||||||| || |||||||||||||||||||    
T  23809605 ctttaaaaggaattgaaagtggttgggattgttgaagcaaaagatttgtttatgttgaatatgatgaactttacttatgtttttgtt 23809691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 159 - 409
Target Start/End: Original strand, 38440138 - 38440404
Alignment:
Q  159 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc-------- 250  Q
    ||||||| ||||||||  ||||||||||   |||||||||||||||||||||||||||| ||  |||||||||| ||||||| |||||| ||            
T  38440138 cttaatggatatccatagataaaataaacgaattttttaactacccgctaattaatggatacggatgcggatttgatggtatccacacctgcagatatcc 38440237  T
Q  251 --------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacg 342  Q
            ||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||||||||  |||| |||||||||| | |||| |||    
T  38440238 atacccactattaaaccgagtaaattacataaataatctcaatatcattcaactttttaagaaaacaccctaggtattatgagtgttataagttattacg 38440337  T
Q  343 ctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatga 409  Q
    ||| || ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  38440338 ctccttcaaaaggaagtgaaagtggttgggattgttggagcaagagctttgtttttgttgaatatga 38440404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 159 - 398
Target Start/End: Complemental strand, 5973391 - 5973136
Alignment:
Q  159 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc-------- 250  Q
    ||||||| | ||||||  ||||||||||   |||||||||||| || |||||||||||| ||| ||||||||||||||||||||||||||||            
T  5973391 cttaatggaaatccattgataaaataaacgaattttttaactatccactaattaatggatacagatgcggatttaatggtattcacacccgcggatatcc 5973292  T
Q  251 --------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacg 342  Q
            ||||||| ||| ||||||||||||||||||||||||||||||||| |  ||| ||||   ||||  ||||||||||||||||| |||| |||    
T  5973291 atacccgctattaaatcgagtaaattacataaataacctcaatatcattcaacttcctaaaaaaaacacctaggtattgtgagtgttatcagttattacg 5973192  T
Q  343 ctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgttttt 398  Q
    |||||||||||| || ||||| ||||||||||||||||||||| | ||||||||||    
T  5973191 ctcttttaaaaggaattgaaagtggttgggattgttgaagcaaaacctttgttttt 5973136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 159 - 432
Target Start/End: Original strand, 11038913 - 11039202
Alignment:
Q  159 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc-------- 250  Q
    ||||||| |||| |||| ||||||||||  ||||||||||||||||||||||||||| | |   || ||||||||||||||| |||||||||            
T  11038913 cttaatggatattcatggataaaataaacggattttttaactacccgctaattaatgaatatggatacggatttaatggtatccacacccgcagatatcc 11039012  T
Q  251 --------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatcaattatcacg 342  Q
            ||||||||||| |||||| ||||||||| || |||| ||||| || |  |||||||| ||| ||  |||||||||||||||   |||| |||    
T  11039013 ataccggctattaaaccgagtaaatttcataaataagcttaataccattccacttcctaagaaaaaaccatacgtattgtgagtgttattcgttattacg 11039112  T
Q  343 ctcttttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||| |||||||| |||| ||| |||||||||||||||| |||| | |||||||||| |||||||||| || ||||||||||  |||||||    
T  11039113 ctcctttaaaaggaagtaaaagtggttgggattgttgatgcaatatctttgtttttattgaatatgatgaactttacttatacttttgtt 11039202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 150 - 277
Target Start/End: Complemental strand, 27337409 - 27337282
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||| || ||  |||||||||||||||||| | ||||||    
T  27337409 agcggataccttaatggatatccacgaataaaataaatggatattttaactacccgctaattaatagatacggatgcggatttaatggtatccgcacccg 27337310  T
Q  250 ctattaaaccgattaaattacataaata 277  Q
    ||||||||| || | |||||| ||||||    
T  27337309 ctattaaactgagtgaattacgtaaata 27337282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 358 - 432
Target Start/End: Complemental strand, 25502319 - 25502245
Alignment:
Q  358 gtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  25502319 gtgaaagtggttgggattgttgaagcaagatctttgtttttgttgaatatgatgaactttacttatgtttttgtt 25502245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 422
Target Start/End: Original strand, 30541205 - 30541492
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||||||| ||||||||||   || ||||||||||||||||||||||||| |   |||| ||||||||||||||  ||||||    
T  30541205 agcggataccttaatggatatccatggataaaataaacgaatattttaactacccgctaattaatggatatggatgccgatttaatggtatttgcacccg 30541304  T
Q  250 c----------------tattaaaccgattaaattacataaataacctcaatatcattcaacattataagaaaacaccctaaatattgtgagtgttatca 333  Q
    |                ||||||||||| |||  |||||||||||||| |||| | |||||| |  |||| ||| |||||   ||||||||||||||| |    
T  30541305 cagatatccatatccgttattaaaccgagtaagatacataaataacct-aataactttcaacttcctaagcaaaaacccttggtattgtgagtgttatta 30541403  T
Q  334 attatcacgctcttttaaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatgacgagctttactta 422  Q
     |||| || ||| |||||||| |||||||| |||||| ||||||||||| ||| | ||||| ||||||||||||||| ||||||||||||    
T  30541404 gttattacactcctttaaaaggaagtgaaagtggttgagattgttgaagtaagaaactttg-ttttgttgaatatgatgagctttactta 30541492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 33189730 - 33189630
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||| ||||| ||| |||||||| ||||||||    
T  33189730 agcggataccttaatggatatccatggataaaataaacggattttttaactacccgctaattaatggatacagatgcgaattcaatggtatccacacccg 33189631  T
Q  250 c 250  Q
    |    
T  33189630 c 33189630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 36299214 - 36299124
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 240  Q
    ||||||| |||||||| ||||||||| |||||||||||  || ||||||||||||||||||||||||| |||||||  |||||||||||||    
T  36299214 agcggatatcttaatggatatccatggataaaataaatgaatattttaactacccgctaattaatggatacaaatgttgatttaatggtat 36299124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 7767396 - 7767309
Alignment:
Q  160 ttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacc 247  Q
    |||||| ||||||||||||||||||||  |||||||||||||||| |||||||||||||||  || | ||||||||||||| ||||||    
T  7767396 ttaatggatatccatgaataaaataaacggattttttaactaccccctaattaatggacacggattcagatttaatggtatccacacc 7767309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 347 - 423
Target Start/End: Complemental strand, 36298975 - 36298898
Alignment:
Q  347 tttaaaagaaagtgaaaatggttgggattgttgaagcaaga-gctttgtttttgttgaatatgacgagctttacttat 423  Q
    ||||||||| ||||||| |||| |||||||||||||||| | |||||||||||||||||||||| |||||||| ||||    
T  36298975 tttaaaagatagtgaaagtggtcgggattgttgaagcaataagctttgtttttgttgaatatgatgagctttatttat 36298898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 1052778 - 1052868
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 240  Q
    |||||||  ||||||| ||||||||| ||||||||||  ||| ||||||||||||||||||||||||| |   ||| ||||||||||||||    
T  1052778 agcggataccttaatggatatccatggataaaataaacggatattttaactacccgctaattaatggataaggatgtggatttaatggtat 1052868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 432
Target Start/End: Complemental strand, 31457464 - 31457378
Alignment:
Q  347 tttaaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||||||||||||||||| | || ||||||||||||||||| || |||||||||||||||||||| || ||||| ||||  |||||||    
T  31457464 tttaaaagaaagtgaaagtagtcgggattgttgaagcaagaagttttgtttttgttgaatatgatgaactttatttatacttttgtt 31457378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 22519130 - 22519215
Alignment:
Q  348 ttaaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||||||| |||||||| |||| |||||||||||| |||| | |||||||||||||||||||||  | ||||| ||||| |||||||    
T  22519130 ttaaaaggaagtgaaagtggtcgggattgttgaaacaagaaactttgtttttgttgaatatgataaactttatttatgcttttgtt 22519215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 432
Target Start/End: Complemental strand, 28636538 - 28636481
Alignment:
Q  375 tgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||||||||||| | |||||||| |||||||||||| || |||||||||||||||||||    
T  28636538 tgttgaagcaaaaactttgtttatgttgaatatgatgaactttacttatgtttttgtt 28636481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 432
Target Start/End: Complemental strand, 5973118 - 5973075
Alignment:
Q  389 ctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    |||||||| |||||||||||| ||||||||||||||||||||||    
T  5973118 ctttgtttatgttgaatatgatgagctttacttatgtttttgtt 5973075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 47925237 - 47925156
Alignment:
Q  159 cttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtat 240  Q
    ||||||| |||||| |  ||||||||||| ||| ||||||||||||  ||||||||||| || || | ||||||||||||||    
T  47925237 cttaatggatatccttagataaaataaatagatattttaactacccattaattaatggatacgaaagtggatttaatggtat 47925156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 2943798 - 2943869
Alignment:
Q  178 taaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccgc 250  Q
    |||||||||  ||| |||||||||||||||||||||| || || ||||| ||||||||||||| |||| ||||    
T  2943798 taaaataaacggatattttaactacccgctaattaat-gatacgaatgcagatttaatggtatccacatccgc 2943869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 1052892 - 1052933
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaata 286  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||    
T  1052892 acccgctattataccgaataaattacataaataaccttaata 1052933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 423
Target Start/End: Original strand, 1053018 - 1053095
Alignment:
Q  347 tttaaaagaaagtgaaaatggttgggattgttgaagcaagag-ctttgtttttgttgaatatgacgagctttacttat 423  Q
    ||||||||| ||| ||  |||| |||||||||||||||| || |||||| |||||||||||||| ||| |||| ||||    
T  1053018 tttaaaagatagtaaacgtggtcgggattgttgaagcaatagactttgtctttgttgaatatgatgagatttatttat 1053095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 7767290 - 7767249
Alignment:
Q  250 ctattaaaccgattaaattacataaataacctcaatatcatt 291  Q
    ||||||||| || ||||||||||||||||||| |||||||||    
T  7767290 ctattaaactgagtaaattacataaataaccttaatatcatt 7767249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 15953904 - 15953945
Alignment:
Q  245 acccgctattaaaccgattaaattacataaataacctcaata 286  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||    
T  15953904 acccgctattaaatcgagtaaattacataaataaccttaata 15953945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 15954019 - 15954104
Alignment:
Q  348 ttaaaagaaagtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||||||| |||||||| || | | ||||||||||||||| || ||| ||||||||| ||||||  ||||||| ||||| |||||||    
T  15954019 ttaaaaggaagtgaaagtgatcgagattgttgaagcaagaagttttatttttgttggatatgatcagctttatttatgcttttgtt 15954104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 2943882 - 2943914
Alignment:
Q  247 ccgctattaaaccgattaaattacataaataac 279  Q
    ||||||||||||||| |||||||||||||||||    
T  2943882 ccgctattaaaccgagtaaattacataaataac 2943914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 25502447 - 25502407
Alignment:
Q  207 taattaatggacacaaatgcggatttaatggtattcacacc 247  Q
    ||||||||||| | | |||||||||||||||||||||||||    
T  25502447 taattaatggatatagatgcggatttaatggtattcacacc 25502407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 158 - 291
Target Start/End: Original strand, 6672 - 6821
Alignment:
Q  158 tcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatgg----------------tatt 241  Q
    |||||||||||||||||| ||||||||||| |||||| |||||| ||  ||||||||||| ||| |||||||||||||||                ||||    
T  6672 tcttaatgaatatccatggataaaataaatggattttctaactaaccattaattaatggatacagatgcggatttaatggtatccacacccgtggatatt 6771  T
Q  242 cacacccgctattaaaccgattaaattacataaataacctcaatatcatt 291  Q
    || ||||||||||||||||| |||||||||||||||||||||||||||||    
T  6772 catacccgctattaaaccgagtaaattacataaataacctcaatatcatt 6821  T

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Target: scaffold0155; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 6820 - 6904
Alignment:
Q  348 ttaaaagaaagtgaaaatggttgggattgttgaagcaagagctttgtttttgttgaatatgacgagctttacttatgtttttgtt 432  Q
    ||||||| |||||||| ||||||||||||||||||||| ||||| |||| |||||||||||| || |||||||||||||||||||    
T  6820 ttaaaaggaagtgaaagtggttgggattgttgaagcaaaagcttcgtttatgttgaatatgatgaactttacttatgtttttgtt 6904  T

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Target: scaffold0115 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 22386 - 22286
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||||| | ||||||||||| ||| ||||||||||||||||||||||||| ||  |||||||||||||||||| | ||||||    
T  22386 agcggataccttaatggatatccacggataaaataaatggatattttaactacccgctaattaatggatacggatgcggatttaatggtatccgcacccg 22287  T
Q  250 c 250  Q
    |    
T  22286 c 22286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 8989 - 9089
Alignment:
Q  150 agcggatgtcttaatgaatatccatgaataaaataaattgattttttaactacccgctaattaatggacacaaatgcggatttaatggtattcacacccg 249  Q
    |||||||  ||||||| ||||||| | ||||||||||| ||| ||||||||||||| ||||||||||| ||  |||| ||||||||||||| | ||||||    
T  8989 agcggataccttaatggatatccacggataaaataaatggatattttaactacccgttaattaatggatacggatgctgatttaatggtatccgcacccg 9088  T
Q  250 c 250  Q
    |    
T  9089 c 9089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 423
Target Start/End: Complemental strand, 66706 - 66639
Alignment:
Q  357 agtgaaaatggttgggattgttgaagcaag-agctttgtttttgttgaatatgacgagctttacttat 423  Q
    ||||||| |||| |||| |||||||||||| || |||||||||| ||||||||| |||||||| ||||    
T  66706 agtgaaagtggtcgggactgttgaagcaagaagttttgtttttggtgaatatgatgagctttatttat 66639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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