View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_36 (Length: 449)
Name: NF17203_low_36
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 15 - 434
Target Start/End: Complemental strand, 52072037 - 52071618
Alignment:
| Q |
15 |
ggggagaagtccttgttgtgcaaaggagggattgaacagaggtgcttggacagctcatgaagacaaaattctctcagactacattaagctccatggtgaa |
114 |
Q |
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| T |
52072037 |
ggggagaagtccttgttgtgcaaaggagggattgaacagaggtgcttggacagctcatgaagacaaaattctctcagactacattaagctccatggtgaa |
52071938 |
T |
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| Q |
115 |
ggaaaatggagaaaccttcccaaaagagcaggttcattaattatgtatcttcttacatagatcatcaatgacacacttttgtttgcttatannnnnnncc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
52071937 |
ggaaaatggagaaaccttcccaaaagagcaggttcattaattatgtatcttcttacatagatcatcaatgacgcacttttgtttgcttatatttttttcc |
52071838 |
T |
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| Q |
215 |
ttcatgtttttgtaaatatatttatgccatgcaggtttaagaagatgtggaaaaagttgtagacttagatggttgaattatctaagaccagatattaaga |
314 |
Q |
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| T |
52071837 |
ttcatgtttttgtaaatatatttatgccatgcaggtttaagaagatgtggaaaaagttgtagacttagatggttgaattatctaagaccagatattaaga |
52071738 |
T |
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| Q |
315 |
gaggcaacatatcctcagatgaagaagatcttatcatccgacttcacaaactacttggaaataggtaacatttgattatcataaaaagtgattactaata |
414 |
Q |
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| T |
52071737 |
gaggcaacatatcctcagatgaagaagatcttatcatccgacttcacaaactacttggaaataggtaacatttgattatcataaaaagtgattactaata |
52071638 |
T |
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| Q |
415 |
ctaattattttgaagaattt |
434 |
Q |
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| T |
52071637 |
ctaattattttgaagaattt |
52071618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 9621943 - 9622011
Alignment:
| Q |
257 |
agatgtggaaaaagttgtagacttagatggttgaattatctaagaccagatattaagagaggcaacata |
325 |
Q |
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| T |
9621943 |
agatgtgggaaaagttgtagacttagatggatgaattatcttagaccagatataaagagaggtaacata |
9622011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 319
Target Start/End: Original strand, 7195365 - 7195424
Alignment:
| Q |
260 |
tgtggaaaaagttgtagacttagatggttgaattatctaagaccagatattaagagaggc |
319 |
Q |
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| T |
7195365 |
tgtggaaaaagttgtagacaaagatggttgaattatctcaaaccaggtataaagagaggc |
7195424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 5843176 - 5843130
Alignment:
| Q |
257 |
agatgtggaaaaagttgtagacttagatggttgaattatctaagacc |
303 |
Q |
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| T |
5843176 |
agatgtggaaaaagttgtagattaagatggataaattatctaagacc |
5843130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 5849918 - 5849872
Alignment:
| Q |
257 |
agatgtggaaaaagttgtagacttagatggttgaattatctaagacc |
303 |
Q |
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| T |
5849918 |
agatgtggaaaaagttgtagattaagatggataaattatctaagacc |
5849872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 348
Target Start/End: Complemental strand, 48892676 - 48892585
Alignment:
| Q |
257 |
agatgtggaaaaagttgtagacttagatggttgaattatctaagaccagatattaagagaggcaacatatcctcagatgaagaagatcttat |
348 |
Q |
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| T |
48892676 |
agatgtggaaaaagttgcagactaagatggatgaactatctaagaccagatataaagagaggaaacataactccagaagaagatgatcttat |
48892585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 16127475 - 16127400
Alignment:
| Q |
243 |
atgcaggtttaagaagatgtggaaaaagttgtagacttagatggttgaattatctaagaccagatattaagagagg |
318 |
Q |
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||||||||||| |||||||||||| ||||||||| | |||||| | |||||| ||||| | |||||||||||||| |
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| T |
16127475 |
atgcaggtttattaagatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagagg |
16127400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 16138984 - 16138910
Alignment:
| Q |
244 |
tgcaggtttaagaagatgtggaaaaagttgtagacttagatggttgaattatctaagaccagatattaagagagg |
318 |
Q |
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| T |
16138984 |
tgcaggtttattaagatgtggaaagagttgtagattgagatggattaactatttaaaacctgatattaagagagg |
16138910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 1319385 - 1319331
Alignment:
| Q |
257 |
agatgtggaaaaagttgtagacttagatggttgaattatctaagaccagatatta |
311 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||| || ||||||| |
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| T |
1319385 |
agatgtggaaagagttgtagacttagatggaataattatctaaggcctgatatta |
1319331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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