View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_39 (Length: 424)
Name: NF17203_low_39
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 37749831 - 37750244
Alignment:
| Q |
1 |
gtttgtagttattgtttgtggttcctatagtatatttagcttgtgctactgtttagtcccatacacaaagccattagtagaggttgtatgcaatgcctcc |
100 |
Q |
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| T |
37749831 |
gtttgtagttattgtttgtggttcctatagtatatttagcttgtgctactgtttagtcccatacacacagccattagtagaggttgtatgcaatgcctcc |
37749930 |
T |
|
| Q |
101 |
atataactaactttatttattcatgaatttatgtttgatatgagttgaataattatgtactgatattagctaattgattttaaaataattccatgtcttt |
200 |
Q |
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| T |
37749931 |
atataactaactttatttattcatgaatttatgtttgatatgagttgaataattatgtactgatattagctaatt-attttaaaataattccatatcttt |
37750029 |
T |
|
| Q |
201 |
cacgccattttcagaagaggacctcgtgagttggaagaccaatttgtgtgagtaaattgtttcattatgcctgggtccctttactgaattcattagcttt |
300 |
Q |
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| T |
37750030 |
cacgccattttcagaagaggacctcgtgagttggaggaccaatttgtgtgagtaaattgtttcattatgcctgggtccctttactgaattcattagcttt |
37750129 |
T |
|
| Q |
301 |
taagtgtagcgaataatgcttttcatattgtcatgagaattaataaatcaccagtagcaattttgcaccatcagtgtcttgaatctttttaaacaaaaat |
400 |
Q |
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| T |
37750130 |
taagtgtagcgaataatgcttttcatattgtcatgagaattgataaatcaccagtagcaattttgcaccatcagtgtcttgaatctttttaaacaaaaat |
37750229 |
T |
|
| Q |
401 |
ctcgttttagtataa |
415 |
Q |
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| T |
37750230 |
ctcgttttagtataa |
37750244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 37734359 - 37734611
Alignment:
| Q |
1 |
gtttgtagttattgtttgtggttcctatagtat----atttagcttgtgctactgtttagtcccatacacaaagccattagtagaggttgtatgcaatgc |
96 |
Q |
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| T |
37734359 |
gtttatagttattgtttgtggctcctatagtattgttatttagcttgtgctactgttaagtcccgtatacactgcgattggtaaaggttgtaagcaatgc |
37734458 |
T |
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| Q |
97 |
ctccatataactaactttatttattcatgaatttatgtttgatatgagttgaataattatgtactgatattagctaattgattttaaaataattccatgt |
196 |
Q |
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| T |
37734459 |
-----------tagatttatttattcgtgaatttatgtttgatatgaattgaataattatgtaccggtattagctaattgattttaaaataattccatat |
37734547 |
T |
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| Q |
197 |
ctttcacgccattttcagaagaggacctcgtgagttggaagaccaatttgtgtgagtaaattgtt |
261 |
Q |
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| T |
37734548 |
ctttcacgccattttcagaaga-tacctcgtgagttgtaagaccaatttgtgagagtaaattgtt |
37734611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 312 - 415
Target Start/End: Original strand, 37734679 - 37734782
Alignment:
| Q |
312 |
aataatgcttttcatattgtcatgagaattaataaatcaccagtagcaattttgcaccatcagtgtcttgaatctttttaaacaaaaatctcgttttagt |
411 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37734679 |
aataatgcttttcatattgtcatgagaattgataaatcaccagtagcaattttgcaccatcagtgtcttgaatctttctaaacaaaaatctcgttttagt |
37734778 |
T |
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| Q |
412 |
ataa |
415 |
Q |
| |
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|||| |
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| T |
37734779 |
ataa |
37734782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 38612572 - 38612441
Alignment:
| Q |
120 |
ttcatgaatttatgtttgatatgagttgaataattatgtactgatattagctaattgattttaaaataattccatgtctttcacgcca---ttttcagaa |
216 |
Q |
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|||||||||||||||||||||||| |||||||||||| || | ||||||||||||| |||||||||||||||| ||||||||||| || ||||||||| |
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| T |
38612572 |
ttcatgaatttatgtttgatatgaattgaataattatatattcatattagctaattaattttaaaataattccttgtctttcacgtcattgttttcagaa |
38612473 |
T |
|
| Q |
217 |
ga-ggacctcgtgagttggaagaccaatttgtg |
248 |
Q |
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|| || ||| |||||||||| ||||||||||| |
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| T |
38612472 |
gatcgagctcttgagttggaa-accaatttgtg |
38612441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 38612357 - 38612295
Alignment:
| Q |
306 |
gtagcgaataatgcttttcatattgtcatgagaattaataaatcaccagtagcaattttgcac |
368 |
Q |
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| T |
38612357 |
gtagctaataatgtttctcatattgttatgagaattgataaatcaccagtagcaattttgcac |
38612295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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