View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_41 (Length: 423)
Name: NF17203_low_41
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 3 - 406
Target Start/End: Complemental strand, 12104900 - 12104498
Alignment:
| Q |
3 |
tgttaaacgttgattgtatgaatgaatgattgattatgttgcgataaaaattgattttttaaatacatttgtaaaaagagaattagactaaaaatcgaga |
102 |
Q |
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| T |
12104900 |
tgttaaacgttgattatatgaatgaatgattgattatgttgcgataaaaattaattttttaaatacatttgtaaaaagagagttagactaaaaatcgaga |
12104801 |
T |
|
| Q |
103 |
ctaaaactcacnnnnnnngttgttgaaaaaatcacttgtatcttatttttatttgattgataatattaaatagtaatagtttaattgcatgagcatgagt |
202 |
Q |
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|||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12104800 |
ctaaaactca-tttttttgttggtgaaaaaatcacttctatcttatttttatttgattgataatattaaatagtaatagtttaattgcatgagcatgagt |
12104702 |
T |
|
| Q |
203 |
acgtcaaataagttaggtatctaaataagtgcaacgaatctgaattctaatttgtggtaacttgttaactacgcataaccacttattttctttagtttta |
302 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12104701 |
acgtcaaataagttaggtatttaaataagtgcaacgagtctgaattctaatttgtggtaacttgttaactacgcataaccacttattttctttagtttta |
12104602 |
T |
|
| Q |
303 |
aatgcaccgaacatcaccctcttttaaaaggttttgattaatgcttgaataatgagattgtaaaaagtttaaaagcatagtactttaattgtgatattaa |
402 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12104601 |
aatgcacctaacatcaccctcttttaaaaggttttgattaatgcttgaataatgagattgtaaaaagtttaaaagcatagtactttaattgtgatattaa |
12104502 |
T |
|
| Q |
403 |
tttc |
406 |
Q |
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|||| |
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| T |
12104501 |
tttc |
12104498 |
T |
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