View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_45 (Length: 414)
Name: NF17203_low_45
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 397
Target Start/End: Complemental strand, 2156458 - 2156062
Alignment:
| Q |
13 |
aatattacatttattcgtcaatttcttttacagttaagccaacatcttataatgaaagttgaatatgtcacccatgacgtcaaactttcattttctannn |
112 |
Q |
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| T |
2156458 |
aatattacatttattcgtcaatttcttttacagttaagccaacatcttatcgtgaaagttgaatatgtcacccatgacgtcaaactttcattttctattt |
2156359 |
T |
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| Q |
113 |
nnnnnactcccacgggttttctctagttagaaagaagaataattagat-aaaacaactcgcaatggacaatcaatca-nnnnnnnaccatttagacatat |
210 |
Q |
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| T |
2156358 |
tttttactcccacgggttttctctagttagaaagaagaataattagataaaaacaactcgcaatggataatcaatcattttttttaccatttagacatat |
2156259 |
T |
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| Q |
211 |
tatcatattaactttttaaaattcccttttgttaccnnnnnnnt----------------atttacacaaatatctaaatgataaaatcttattgaatgt |
294 |
Q |
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| T |
2156258 |
tatcatattaactttttaaaattcccttttgttaccaaaaaaatattaattttttaaaatatttacacaaatatctaaatgataaaatcttattgaatat |
2156159 |
T |
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| Q |
295 |
gccaataaaagtatttcatattaattgaagttgcataaagtggtaactcaaccgataaaaatgttgaaattattaggtcgaatgtcttgatcggaactca |
394 |
Q |
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| T |
2156158 |
gctaataaaattatttgatattaattgaagttgc------tggtaactcaactgataaaaatgttgaaattattaggtcgaatgtcttgatcggaactca |
2156065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 388
Target Start/End: Original strand, 38157174 - 38157220
Alignment:
| Q |
342 |
tcaaccgataaaaatgttgaaattattaggtcgaatgtcttgatcgg |
388 |
Q |
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| T |
38157174 |
tcaaccgataaaaatgttgaaattgttagatcgaatgttgtgatcgg |
38157220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 385
Target Start/End: Complemental strand, 39809991 - 39809952
Alignment:
| Q |
346 |
ccgataaaaatgttgaaattattaggtcgaatgtcttgat |
385 |
Q |
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||||||||||||||||||||||||||| |||||| ||||| |
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| T |
39809991 |
ccgataaaaatgttgaaattattaggtagaatgttttgat |
39809952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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