View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17203_low_47 (Length: 404)
Name: NF17203_low_47
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 30730509 - 30730721
Alignment:
| Q |
18 |
ctatcaagcaaagaatcgcagccctagcccaagacaaaatcttcaaagatggtatgctacatcctaaatatattctcatttcaccttttacactgtcatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30730509 |
ctatcaagcaaagaatcgcagccctagcccaagacaaaatcttcaaagatggtatgctacatcctaaatatattctcatttcaccttttacactgtcatg |
30730608 |
T |
|
| Q |
118 |
tagtataagttttctgattcattaattaatgactgtttagattttgttgtatatatatatggtcattgatacgtagttttatactttcagtatgtcatgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30730609 |
tagtataagttttctgattcattaattaatcactgtttagattttg--gtgtatatatatggtcattgatacgtagttttatactttcagtatgtcatgt |
30730706 |
T |
|
| Q |
218 |
tcaagagaaagttta |
232 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
30730707 |
tcaagagaaagttta |
30730721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 262 - 394
Target Start/End: Original strand, 30730716 - 30730848
Alignment:
| Q |
262 |
agtttatagagatgtacttttcaattgtaccactaattatttttactataggagaataattaattattaatgaatgaaaactatattataggcttataaa |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30730716 |
agtttatagagatgtacttttcaattgtaccactaattatttttactataggagaataattaattaataatgaatgaaaactatattataggcttataaa |
30730815 |
T |
|
| Q |
362 |
tggaagaaaggataacaacggaattaggttctt |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
30730816 |
tggaagaaaggataacaacggaattaggttctt |
30730848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University