View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_48 (Length: 394)
Name: NF17203_low_48
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 40286064 - 40286416
Alignment:
| Q |
16 |
tttttggacttattttatcttttgttgtaacaatagctatgataagtgtttatgctataaaggcttaattgtttatccaaatagaaaaagcaacaaaata |
115 |
Q |
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| T |
40286064 |
ttttttgacttattttatcttttgttgtaacaatagctatgataagtgtttatgctataaaggcttaattgtttatccaaatagaaaaggcaacaaaata |
40286163 |
T |
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| Q |
116 |
caaaggtgaacttgagatttagtattgaaccaaaaccttaacaaattaacgtgtatgttctcttgctatgttctgaacctaccaatgtaattaagctata |
215 |
Q |
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| T |
40286164 |
caaaggtgaacttgagatttagtattgaaccaaaaccttaacaaattaacgtgtatgttctcttgctatgttctgaacctaccaatgtaattaagctata |
40286263 |
T |
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| Q |
216 |
tacttcaatttccaacacctaagttaacacgtccttgcgtttaacaaaaaatttactatagagaaatttccaaaagtagtttatttttcggagaaaactt |
315 |
Q |
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| T |
40286264 |
tacttcaatttccaacacctaagttaacacgtccttgcgtttaacaaaaaatttactatagagaaatttccaaaagtagtttatttttcggagaaaactt |
40286363 |
T |
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| Q |
316 |
taaccaagtcatttcatgcatttaacatatactataccaaaagcatagcaaca |
368 |
Q |
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| T |
40286364 |
taaccaagtcatttcatgcatttaacatatactataccaaaagcatagtaaca |
40286416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 17942117 - 17942059
Alignment:
| Q |
27 |
attttatcttttgttgtaacaatagctatgataagtgtttatgctataaaggcttaatt |
85 |
Q |
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| T |
17942117 |
attttatcttttgttttaaaaatagttaagataagtgcttatgctataagtgcttaatt |
17942059 |
T |
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