View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17203_low_5 (Length: 871)
Name: NF17203_low_5
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 766; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 766; E-Value: 0
Query Start/End: Original strand, 49 - 861
Target Start/End: Original strand, 52630119 - 52630934
Alignment:
| Q |
49 |
aaaaccatcaaaattaattttgagacatgtaatgtactttacaaggaaagaaagaacaaattcactgtaaaattgtgtaagatttggcgaatcagataat |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52630119 |
aaaaccatcaaaattaattttgagacatgtaatgtactttacaaggaaagaaagaacaaattcactgtaaaattgtgtaagatttggcgaatcagataat |
52630218 |
T |
|
| Q |
149 |
gaagtacgtaagagagagaaggaaagatatgcacatactctttgtggagctggttgaagagcaattctagctcttgtgatgattccaaattgtccaagac |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52630219 |
gaagtacgtaagagagagaaggaaagatatgcacatactctttgtggagctggttgaagagcaattctagctcttgtgatgattccaaattgtccaagac |
52630318 |
T |
|
| Q |
249 |
caccaagaacagaatggaacaagtctgaattacgatcttctgaacacgtcaacacctcaccctttcctatattaatacacaagtacacacaccatgacat |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52630319 |
caccaagaacagaatggaacaagtctgaattacgatcttctgaacacgtcaacacctcaccctttcctatattaatacacaagtacacataccatgacat |
52630418 |
T |
|
| Q |
349 |
accaatttgagaacagtactaggacagtgggagaatgaagaatgcattttatagcaatgattaattaagtagcaagcaattaacttattattaagtacct |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
52630419 |
accaatttgagaacagtactaggacagtgggagaatgaagaatgcattttatagtagtgattaattaagtagcaagcaattaacttattattaaatacct |
52630518 |
T |
|
| Q |
449 |
gtaactacatctagctcaaaaacattggagatttgaggaccgtgattgaaggtttggccactaataccaccattagatagagtaccacccacagacaaat |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52630519 |
gtaactacatctagctcaaaaacattggagatttgaggaccgtgattgaaggtttggccactaataccaccattagatagagtaccacccacagacaaat |
52630618 |
T |
|
| Q |
549 |
acaagtaatcagtccaagacataggtgctaacccatactccaatgttgacttcagaacatgtatccataattcaccaccccaaacatccacatacatttc |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52630619 |
acaagtaatcagtccaagacataggtgctaacccatactccaatgttgccttcagaacatgtatccataattcaccaccccaaacatccacatacatttc |
52630718 |
T |
|
| Q |
649 |
tttctcccaaattagaggacccttaattcctacacctccttttcccatttcaatcaccactcctttcatccctgtatctgcttgtccgtttattgagtgt |
748 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
52630719 |
tttctcccaaactagaggacccttaattcctacacctccttttcccatttcaatcaccactcctttcatccttgtatccgcttgtccgtttattgagtgt |
52630818 |
T |
|
| Q |
749 |
ccgtgtcctctcgctgacaccgcaa---acttctgccatttatacgccgctttaactacccttgccacgtcattggccgacgctggtcgaaccaccgcaa |
845 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52630819 |
ccgtgtcctctcgctgacaccgcaaagtactgctgccatttatacgccgctttaactacccttgccacgtcattggccgacgctggtcgaaccaccgcaa |
52630918 |
T |
|
| Q |
846 |
tcgtctctcctttgct |
861 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
52630919 |
tcgtctctcctttgct |
52630934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 496 - 567
Target Start/End: Original strand, 52454570 - 52454641
Alignment:
| Q |
496 |
gaaggtttggccactaataccaccattagatagagtaccacccacagacaaatacaagtaatcagtccaaga |
567 |
Q |
| |
|
||||||||| |||||||||||| ||||||| ||||| ||||| || || |||||||| |||||||||||||| |
|
|
| T |
52454570 |
gaaggtttgtccactaataccagcattagagagagttccaccaaccgataaatacaaataatcagtccaaga |
52454641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 500 - 567
Target Start/End: Complemental strand, 17243504 - 17243437
Alignment:
| Q |
500 |
gtttggccactaataccaccattagatagagtaccacccacagacaaatacaagtaatcagtccaaga |
567 |
Q |
| |
|
|||||||| | ||| ||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17243504 |
gtttggcccccaattccagcattagagagagtgccaccaacagacaaatacaagtaatcagtccaaga |
17243437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 35830475 - 35830413
Alignment:
| Q |
197 |
gctggttgaagagcaattctagctcttgtgatgattccaaattgtccaagaccaccaagaaca |
259 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||||| |||||||| ||||| || ||||||||| |
|
|
| T |
35830475 |
gctggttcaagagaaattctagctctagtgatgatgccaaattgaccaagccctccaagaaca |
35830413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University