View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_50 (Length: 382)
Name: NF17203_low_50
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 43186054 - 43186421
Alignment:
| Q |
1 |
tgctaagcataatcagttaagtgagattttcaagagcacgctttgggttgaatcaaggagacaggaccactgacactagtcttaagagaatgtattttgc |
100 |
Q |
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| T |
43186054 |
tgctaagcataatcagttaagtgagattttcaagagcacgctttgggttgaatcaaggagacaggaccactgacactagtcataagagaatgtattttgc |
43186153 |
T |
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| Q |
101 |
attgtttagctaaccaatattacaaattatcactaattaaaaaatacaccaagtacatagattgcattaaactattttaaaacaaacttaaagtgacagt |
200 |
Q |
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| T |
43186154 |
attgtttagctaaccaatattacaaattatcactaattaaaaaatacaccaagtacatagattgcattaaactattttaaaacaaacttaaagtgacagt |
43186253 |
T |
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| Q |
201 |
tcctttctagcccttgatcttaatcatggctgttataattgctacacctttctgtaagccaaaaggttgtgtatctcacttcctttactttgattacttt |
300 |
Q |
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| T |
43186254 |
tcctttctagcccttgatcttaatcatggctgttataattgctacacctttctgtaagccaaaaggttgtgtatctcacttcctttactttgattacttt |
43186353 |
T |
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| Q |
301 |
caatgtagtaaccatctttatacttcactgcatcaaaagcatattaatgtaaccaaaagcaccctatg |
368 |
Q |
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| T |
43186354 |
caatgtagtaaccatctttatacttcactgcatcaaaagcatattaatgtaaccaaaagcaccctatg |
43186421 |
T |
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Back To:
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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 5039422 - 5039519
Alignment:
| Q |
25 |
gattttcaagagcacgctttgggttgaatcaaggagacagga-ccactga-------cactagtcttaagagaatgtattttgcattgtttagctaac |
114 |
Q |
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| T |
5039422 |
gatttttaagagcacgctttgggttgaattaaggagacaggacccactgactctgctcactaatcttaagagaatgtcttttgcattggttagctaac |
5039519 |
T |
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