View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_52 (Length: 373)
Name: NF17203_low_52
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 4625513 - 4625214
Alignment:
| Q |
1 |
aacttcaaaaggtaagcaaaaaatacataccttggtgcaagaaaaaatggaacagggtccctagcaaaagttggatgaggaattgcaggaagattacaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4625513 |
aacttcaaaaggtaagcaaaaaatacataccttggtgcaagaaaaaatggaacagggtccctagcaaaagttggatgaggaattgcaggaagattacaac |
4625414 |
T |
|
| Q |
101 |
ctatgcttatataaacaggcttgctttctttcaaagcagttgaaattgcagtatcaataagttcatgtgcatcctccaagttattcaccactgcctgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4625413 |
ctatgcttatataaacaggcttgctttctttcaaagcagttgaaattgcagtatcaataagttcatgtgcatcctccaagttattcaccactgcctgaaa |
4625314 |
T |
|
| Q |
201 |
aattcacaccacaatatcatcaaattctcaatgatcaaaatagacatgtgtgat--atatgtagcaacaacaattcatattaaagatgtgtcggataact |
298 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4625313 |
aattcacaccacaatatcatcaaattctcagtgatcaaaatagacatgtgtgatatatatgtagcaacaacaattcatattaaagatgtgtcggataact |
4625214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 4625189 - 4625130
Alignment:
| Q |
299 |
tctgacacatgtccaccgacacacgcgttatattcaattattctatattctcaaactatt |
358 |
Q |
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| T |
4625189 |
tctgacacatgtccaccgagacacgcgttatattcaattattctatattctcaaactatt |
4625130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 67 - 196
Target Start/End: Complemental strand, 25604579 - 25604450
Alignment:
| Q |
67 |
aaagttggatgaggaattgcaggaagattacaacctatgcttatataaacaggcttgctttctttcaaagcagttgaaattgcagtatcaataagttcat |
166 |
Q |
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||||| ||||||||||| |||| | ||||| || |||||||||||||| |||||||| ||||||| ||||||||||| ||||||||||| | |||| |
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| T |
25604579 |
aaagtgggatgaggaataccaggcaagttacagccaatgcttatataaacgggcttgctctctttcagcgcagttgaaatcgcagtatcaatcaactcat |
25604480 |
T |
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| Q |
167 |
gtgcatcctccaagttattcaccactgcct |
196 |
Q |
| |
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| T |
25604479 |
gagcatcttccaagttattcaccacagcct |
25604450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 66 - 196
Target Start/End: Complemental strand, 25624289 - 25624159
Alignment:
| Q |
66 |
aaaagttggatgaggaattgcaggaagattacaacctatgcttatataaacaggcttgctttctttcaaagcagttgaaattgcagtatcaataagttca |
165 |
Q |
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|||||| || |||||||||||||| | ||||| | ||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||| | ||| |
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| T |
25624289 |
aaaagtggggtgaggaattgcaggcaagttacagctaatgcttatatagacaggcttgctctctttcagtgcagttgagattgcagtatcaatcaactca |
25624190 |
T |
|
| Q |
166 |
tgtgcatcctccaagttattcaccactgcct |
196 |
Q |
| |
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|| ||||| ||||||| ||||||||| |||| |
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|
| T |
25624189 |
tgagcatcttccaagtgattcaccacagcct |
25624159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 20434989 - 20434895
Alignment:
| Q |
102 |
tatgcttatataaacaggcttgctttctttcaaagcagttgaaattgcagtatcaataagttcatgtgcatcctccaagttattcaccactgcct |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| | |||||||||||| |||||||| || ||||| |||| |
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| T |
20434989 |
tatgcttatataaacaggcttgctttctttcagtgctgttgagattgcagtgtcaatcatttcatgtgcatcttccaagttgttgaccacagcct |
20434895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 5331063 - 5330969
Alignment:
| Q |
102 |
tatgcttatataaacaggcttgctttctttcaaagcagttgaaattgcagtatcaataagttcatgtgcatcctccaagttattcaccactgcct |
196 |
Q |
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|||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| | |||||||||||| |||||||| || ||||| |||| |
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| T |
5331063 |
tatgcttatataaacaggcttgctttctttcagtgctgttgagattgcagtgtcaatcatttcatgtgcatcttccaagttgttgaccacagcct |
5330969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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