View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17203_low_53 (Length: 373)
Name: NF17203_low_53
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17203_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 47329052 - 47328690
Alignment:
| Q |
1 |
tggtccagtgactttaacctgaaggagcaatgacctgataacgtgcaactaaagaaaaaattcccaatgtgatccaaggttattttggttggtccttgat |
100 |
Q |
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| T |
47329052 |
tggtccagtgactttaacctgaaggagcaatgacctgataacgtgcaactaaagaaaaaattcccaatgtgatccaaggttattttggttggtccttgat |
47328953 |
T |
|
| Q |
101 |
taaaggtttggatatttttgtcattgacattacactcttcatagttagctttgttaagtataaccacactgtggcttccagattcatagttgaatactgc |
200 |
Q |
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| T |
47328952 |
taaaggtttggatatttttgtcattgacattacactcttcatagttagctttgttaagtataaccacactgtggcttccagattcatagttgaatactgc |
47328853 |
T |
|
| Q |
201 |
aaaaacatggtaccaatattacaaataaataaataattgtaacattattgaaatgtaaatgtgtgattaattacctagattgtcatttaatttgattgtg |
300 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47328852 |
aaaaacatggtaccaacattacaaataattaaataattgtaacattattgaaatgtaaatgtgtgattaattacctagattgtcatttaatttgaatgtg |
47328753 |
T |
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| Q |
301 |
aaatttgcagcccattttgaatagaaagaagtaccaccaggaggaaaactagtccaacctatg |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47328752 |
aaatttgcagcccattttgaatagaaagaagtaccaccaggaggaaaactagtccaacctatg |
47328690 |
T |
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