View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17203_low_55 (Length: 371)

Name: NF17203_low_55
Description: NF17203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17203_low_55
NF17203_low_55
[»] chr3 (5 HSPs)
chr3 (94-354)||(43597857-43598120)
chr3 (14-98)||(43597747-43597835)
chr3 (200-274)||(33068264-33068338)
chr3 (200-276)||(27786528-27786604)
chr3 (200-236)||(8380471-8380507)
[»] chr5 (3 HSPs)
chr5 (205-255)||(7135329-7135379)
chr5 (206-261)||(39231871-39231926)
chr5 (200-261)||(38244157-38244218)
[»] chr2 (4 HSPs)
chr2 (200-274)||(34360838-34360912)
chr2 (207-274)||(36446985-36447052)
chr2 (206-274)||(33853824-33853892)
chr2 (201-257)||(34138768-34138824)
[»] chr1 (4 HSPs)
chr1 (213-255)||(5091755-5091797)
chr1 (198-257)||(42074203-42074262)
chr1 (203-257)||(11016664-11016718)
chr1 (201-247)||(46673860-46673906)
[»] chr4 (6 HSPs)
chr4 (200-257)||(25129762-25129818)
chr4 (200-261)||(32125410-32125471)
chr4 (200-261)||(47493208-47493269)
chr4 (219-261)||(51333452-51333494)
chr4 (208-261)||(33004250-33004303)
chr4 (200-236)||(25233615-25233651)
[»] chr8 (4 HSPs)
chr8 (200-259)||(108202-108261)
chr8 (204-257)||(11334255-11334308)
chr8 (204-257)||(30857305-30857358)
chr8 (219-275)||(4079554-4079610)
[»] chr7 (3 HSPs)
chr7 (212-278)||(16970312-16970378)
chr7 (200-261)||(42926992-42927053)
chr7 (206-259)||(47877881-47877934)
[»] chr6 (2 HSPs)
chr6 (200-274)||(7055630-7055704)
chr6 (207-257)||(26478521-26478571)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 94 - 354
Target Start/End: Original strand, 43597857 - 43598120
Alignment:
Q  94 ttgttaatgacatgacaaagtttcacatgccactaatattcatgtaagtgtgttagattatcgatctt---tgcgaggttattacacaaaaatgcagcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |||||| |||||||||||||||||||    
T  43597857 ttgttaatgacatgacaaagtttcacatgccactaatattcatgtaagtgtgttagattatcgatcttctttgagaggttcttacacaaaaatgcagcta 43597956  T
Q  191 ttgaacttaatagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtatgtgtatttgacaagaa 290  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43597957 ttgaacttaatagatcaaatatattaggtattcaataaacttaaaaagtagttttttgtttataaatatgagcagatgaagtatgtgtatttgacaagaa 43598056  T
Q  291 aatgggagaacttggatgttatgtgacatattttgattcaataaaattgttgaaccaaataagt 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43598057 aatgggagaacttggatgttatgtgacatattttgattcaataaaattgttgaaccaaataagt 43598120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 43597747 - 43597835
Alignment:
Q  14 agagaatggatagttcatgttcggtgtgatactc----acaatcatgaattagcaaataccttagaaggtcatccttatatgtgttgtt 98  Q
    |||||||||||||||||||||| |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43597747 agagaatggatagttcatgttcagtgtgatactcactcacaatcatgaattagcaaataccttagaaggtcatccttatatgtgttgtt 43597835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 33068264 - 33068338
Alignment:
Q  200 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtat 274  Q
    ||||| ||||||||||| ||||||||| ||  |||||  || |||||||||||||||||||| | ||||||||||    
T  33068264 atagaccaaatatattaaatattcaatgaatgtaaaaaataattttttgtttataaatatgatcggatggagtat 33068338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 27786528 - 27786604
Alignment:
Q  200 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtatgt 276  Q
    ||||| |||||||||||| |||||||| ||||||||| || || ||||| |||||||| ||| | || |||||||||    
T  27786528 atagaccaaatatattaggtattcaatgaacctaaaaagttgtgttttgcttataaatgtgatcggagggagtatgt 27786604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 8380507 - 8380471
Alignment:
Q  200 atagatcaaatatattagatattcaataaacctaaaa 236  Q
    |||||||||||||||||  ||||||||||||||||||    
T  8380507 atagatcaaatatattaattattcaataaacctaaaa 8380471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 7135329 - 7135379
Alignment:
Q  205 tcaaatatattagatattcaataaacctaaaaggtagttttttgtttataa 255  Q
    ||||||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  7135329 tcaaatatattagttattcaataaatctaaaacgtagttttttgtttataa 7135379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 39231871 - 39231926
Alignment:
Q  206 caaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 261  Q
    |||||| ||| |||||| ||| |||||||||  |||||||||||||||||||||||    
T  39231871 caaatacatttgatattaaatgaacctaaaaaatagttttttgtttataaatatga 39231926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 38244157 - 38244218
Alignment:
Q  200 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 261  Q
    |||||||||||| ||||||| |||||| || |||||| | | | ||||||||||||||||||    
T  38244157 atagatcaaatacattagatgttcaatgaatctaaaaagcactcttttgtttataaatatga 38244218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 34360838 - 34360912
Alignment:
Q  200 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtat 274  Q
    |||||||||||| |||  ||||||||| ||||||||| |||  |||||  |||||||||||| ||||||||||||    
T  34360838 atagatcaaatacattgtatattcaatgaacctaaaaagtacatttttacttataaatatgatcagatggagtat 34360912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 36447052 - 36446985
Alignment:
Q  207 aaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtat 274  Q
    |||||||||||||||| ||||||  ||||| || | |||||| |||||||||||| |||||| |||||    
T  36447052 aaatatattagatatttaataaatttaaaaagttgatttttgcttataaatatgatcagatgaagtat 36446985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 33853892 - 33853824
Alignment:
Q  206 caaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtat 274  Q
    |||||| ||||  |||||||| ||||||||| |||  ||||||||||||||||||| | |||| |||||    
T  33853892 caaatacattatgtattcaatgaacctaaaaagtacatttttgtttataaatatgaccggatgaagtat 33853824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 34138768 - 34138824
Alignment:
Q  201 tagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 257  Q
    ||||| |||||||| |  ||||||||||||||||||  | |||||||||||||||||    
T  34138768 tagatgaaatatatcaattattcaataaacctaaaaaattgttttttgtttataaat 34138824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 5091755 - 5091797
Alignment:
Q  213 attagatattcaataaacctaaaaggtagttttttgtttataa 255  Q
    ||||| |||||||| ||||||||||||||||||||||||||||    
T  5091755 attagttattcaatgaacctaaaaggtagttttttgtttataa 5091797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 42074203 - 42074262
Alignment:
Q  198 taatagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 257  Q
    ||||||| ||||||||||||  ||||||| |||||||||  |||||||||| ||||||||    
T  42074203 taatagaccaaatatattaggcattcaatgaacctaaaaaatagttttttgcttataaat 42074262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 11016664 - 11016718
Alignment:
Q  203 gatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 257  Q
    ||||| ||| ||||| |||||||||||||||||| || | |||||||||||||||    
T  11016664 gatcatatacattagttattcaataaacctaaaaagttgatttttgtttataaat 11016718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 46673906 - 46673860
Alignment:
Q  201 tagatcaaatatattagatattcaataaacctaaaaggtagtttttt 247  Q
    |||| ||||||||||||||||||||| || |||||| ||||||||||    
T  46673906 tagaccaaatatattagatattcaatgaatctaaaaagtagtttttt 46673860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 25129762 - 25129818
Alignment:
Q  200 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 257  Q
    |||||||||||||||||||||||||||||| ||||||  | |||||||| ||||||||    
T  25129762 atagatcaaatatattagatattcaataaatctaaaa-tttgttttttgattataaat 25129818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 32125410 - 32125471
Alignment:
Q  200 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 261  Q
    ||||| || ||| |||||||||||||| ||||||||| |||| |||||| ||||||||||||    
T  32125410 atagaccacatacattagatattcaatgaacctaaaaagtagatttttgcttataaatatga 32125471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 47493269 - 47493208
Alignment:
Q  200 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 261  Q
    ||||| |||||| ||||| ||||||||||| |||||| ||||||||||  ||||||||||||    
T  47493269 atagaccaaatacattaggtattcaataaatctaaaaagtagttttttacttataaatatga 47493208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 261
Target Start/End: Complemental strand, 51333494 - 51333452
Alignment:
Q  219 tattcaataaacctaaaaggtagttttttgtttataaatatga 261  Q
    |||||||||||  ||||| ||||||||||||||||||||||||    
T  51333494 tattcaataaatttaaaaagtagttttttgtttataaatatga 51333452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 33004250 - 33004303
Alignment:
Q  208 aatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 261  Q
    |||| |||||||||||||||||| ||||| || |||||||  ||||||||||||    
T  33004250 aatacattagatattcaataaacttaaaatgttgtttttttcttataaatatga 33004303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 25233651 - 25233615
Alignment:
Q  200 atagatcaaatatattagatattcaataaacctaaaa 236  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  25233651 atagaccaaatatattagatattcaataaatctaaaa 25233615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 108261 - 108202
Alignment:
Q  200 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatat 259  Q
    ||||| ||||||||| | ||||||||| ||||||||| ||| |||||| |||||||||||    
T  108261 atagaccaaatatatcatatattcaatgaacctaaaaagtaattttttatttataaatat 108202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 11334308 - 11334255
Alignment:
Q  204 atcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 257  Q
    ||||||||||||| |||||||||||| ||||||   |||||||| |||||||||    
T  11334308 atcaaatatattaaatattcaataaatctaaaaaagagttttttatttataaat 11334255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 30857305 - 30857358
Alignment:
Q  204 atcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 257  Q
    ||||||||||||||  |||||||||| |||||| ||| ||||||| ||||||||    
T  30857305 atcaaatatattaggcattcaataaatctaaaaagtaattttttgcttataaat 30857358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 4079554 - 4079610
Alignment:
Q  219 tattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtatg 275  Q
    |||||||| |||||||||  | ||||||||||||||||||||| | |||| ||||||    
T  4079554 tattcaatgaacctaaaaaattgttttttgtttataaatatgaccggatgaagtatg 4079610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 16970312 - 16970378
Alignment:
Q  212 tattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtatgtgt 278  Q
    |||||| |||||||| ||| ||||| ||||||||| |||||||||||||| | |||  |||||||||    
T  16970312 tattagttattcaatgaacttaaaaagtagtttttagtttataaatatgatcggattaagtatgtgt 16970378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 42927053 - 42926992
Alignment:
Q  200 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 261  Q
    |||||||||||| ||||| |||||||| || |||| | || | |||||||||||||||||||    
T  42927053 atagatcaaatacattagttattcaatgaatctaagaagttgatttttgtttataaatatga 42926992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 47877934 - 47877881
Alignment:
Q  206 caaatatattagatattcaataaacctaaaaggtagttttttgtttataaatat 259  Q
    |||||||||||  |||||||||||| ||||| |||  |||||||||||||||||    
T  47877934 caaatatattatgtattcaataaacttaaaaagtacatttttgtttataaatat 47877881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 7055630 - 7055704
Alignment:
Q  200 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtat 274  Q
    |||||||||||||||||  |||||||| ||||||||| |||  |||||| |||||||| ||| | || |||||||    
T  7055630 atagatcaaatatattatgtattcaatgaacctaaaaagtacatttttgcttataaatgtgatcggagggagtat 7055704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 26478521 - 26478571
Alignment:
Q  207 aaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 257  Q
    ||||| ||||| |||||||||||||||||| ||||| ||||| ||||||||    
T  26478521 aaatacattaggtattcaataaacctaaaaagtagtgttttgcttataaat 26478571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University